Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq18 122 7e-23 seq3 118 9e-22 seq1 118 9e-22 seq133 82.4 6e-11 >seq18 Length=77673080 Score = 122 bits (134), Expect = 7e-23 Identities = 219/316 (69%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 29656 CACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29715 |||||| | | || ||||||||||| || | | |||| ||| || || || | || Sbjct 7477130 CACGTGATTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACAAG 7477189 Query 29716 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCAC 29775 || || ||||| | |||| | || || ||||||||| || |||||||| ||||| Sbjct 7477190 ATCGCACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 7477249 Query 29776 CCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCAC 29835 ||||| ||||| ||| |||| | ||| || | || ||||||||||| ||||| ||| Sbjct 7477250 ACCGAGGCCCATATCCGCTGAACGCTGATACATTTGACACGAGAGCTCCCCGTCCACCAC 7477309 Query 29836 GTAAAACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG-TCTTTGG 29891 ||| ||||| ||||| ||||| |||||||| ||||| | || || || | Sbjct 7477310 GTAGAACTGTGCGAACATG---TGGCATGGAGGAAGCGCCATCA-ACTTGAGATCAGAAG 7477365 Query 29892 GGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGG 29951 | ||||| || | | ||||| || | || || || |||||| |||| ||| | Sbjct 7477366 GATTCCAAGCCGATAATATGATACGACGATCATCAGGATTGTTCTTGATCTTGTCGATTA 7477425 Query 29952 CGTTTTGCAGCTGATC 29967 ||| | | |||||||| Sbjct 7477426 CGTCTAGGAGCTGATC 7477441 >seq3 Length=43957692 Score = 118 bits (130), Expect = 9e-22 Identities = 192/275 (70%), Gaps = 6/275 (2%) Strand=Plus/Minus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 || || |||||||| || | | |||||||| || || || | || | || ||| Sbjct 31765884 TACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGA 31765825 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 || | |||| | || || ||||||||| || |||||||| ||||| || || | ||| Sbjct 31765824 GCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATA 31765765 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 29845 ||| |||| | ||| || | |||||| |||||||| || || ||| || ||||| | Sbjct 31765764 TCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 31765705 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 ||||| ||||||||||| || ||||| || | ||| |||||||| ||| | Sbjct 31765704 AACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGAT 31765648 Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | |||| |||| || || || |||||| |||| Sbjct 31765647 AATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31765613 Score = 118 bits (130), Expect = 9e-22 Identities = 192/275 (70%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 || || |||||||| || | | |||||||| || || || | || | || ||| Sbjct 31809857 TACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGA 31809916 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 || | |||| | || || ||||||||| || |||||||| ||||| || || | ||| Sbjct 31809917 GCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATA 31809976 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 29845 ||| |||| | ||| || | |||||| |||||||| || || ||| || ||||| | Sbjct 31809977 TCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 31810036 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 ||||| ||||||||||| || ||||| || | ||| |||||||| ||| | Sbjct 31810037 AACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGAT 31810093 Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | |||| |||| || || || |||||| |||| Sbjct 31810094 AATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31810128 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||| ||||| | ||| | || || || ||||| ||| |||||||| || || || || Sbjct 40985358 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 40985417 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAA 29841 ||||| || |||| | ||| || | || |||||||||||||||| |||||||| Sbjct 40985418 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 40985477 Query 29842 CTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| | ||||| ||||| |||||||| ||||| || | ||| || ||||| Sbjct 40985478 CTGTGCAAACATG---TGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 40985534 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| || || || | || || || |||||| |||| Sbjct 40985535 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 40985576 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||| ||||| | ||| | || || || ||||| ||| |||||||| || || || || Sbjct 41004336 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 41004395 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAA 29841 ||||| || |||| | ||| || | || |||||||||||||||| |||||||| Sbjct 41004396 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 41004455 Query 29842 CTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| | ||||| ||||| |||||||| ||||| || | ||| || ||||| Sbjct 41004456 CTGTGCAAACATG---TGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 41004512 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| || || || | || || || |||||| |||| Sbjct 41004513 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 41004554 >seq1 Length=45320942 Score = 118 bits (130), Expect = 9e-22 Identities = 192/275 (70%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 || || |||||||| || | | |||||||| || || || | || | || ||| Sbjct 31775350 TACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGATCACACACATGA 31775409 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 || | |||| | || || ||||||||| || |||||||| ||||| || || | ||| Sbjct 31775410 GCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCAAGGCTCATA 31775469 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 29845 ||| |||| | ||| || | |||||| |||||||| || || ||| || ||||| | Sbjct 31775470 TCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 31775529 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 ||||| ||||||||||| || ||||| || | ||| |||||||| ||| | Sbjct 31775530 AACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGAT 31775586 Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | |||| |||| || || || |||||| |||| Sbjct 31775587 AATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31775621 Score = 104 bits (114), Expect = 2e-17 Identities = 159/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||||||||| | ||| | || || || ||||| ||| |||||||| || || || || Sbjct 9628181 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAAAGGTACACCAAG 9628122 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGT-CGCTCACGTAAA 29840 ||||| || |||| | ||| || | || ||||| |||||||| | ||| ||||||| Sbjct 9628121 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCA-ACGTAAA 9628063 Query 29841 ACTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCC 29897 |||| | ||||| ||||| |||||||| ||||| || | ||| || |||| Sbjct 9628062 ACTGAGCAAACATG---TGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCC 9628006 Query 29898 AGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 | ||| ||| || || |||| || || || |||||| |||| Sbjct 9628005 AAGCAGACATTATAATCCGCCGATCGTCAGGATTGTTCTTGAT 9627963 >seq133 Length=227095 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/222 (68%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||| ||||| | || | || || || ||||| ||| |||||||| || || || || Sbjct 171952 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 171893 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAA 29841 ||||| || |||| | ||| || | || || || |||||||| | | |||||||| Sbjct 171892 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 171833 Query 29842 CTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| | ||||| ||||| |||||||| ||||| || | ||| || ||||| Sbjct 171832 CTGAGCAAACATG---TGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 171776 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| || || || | || || || |||||| |||| Sbjct 171775 AGCCGACATTATAATCCGTCGATCGTCAGGATTGTTCTTGAT 171734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406114956188956