Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 seq18 104 2e-17 seq3 91.5 1e-13 seq133 89.7 4e-13 >seq1 Length=45320942 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||||||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 9628181 GACGTGAGCTAGAATGCATGTAAGAAGGGAGTATGAGGCAATGTTAAAAGGTACACCAAG 9628122 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCAT-CGCTTACGTAAA 27334 ||||| || | || | ||| || | |||||||| |||||||||| ||| ||||||| Sbjct 9628121 ACCCATATCAGCTGAGCGCTGATACATTTGACACGAAAGCTCTCCATTCGCA-ACGTAAA 9628063 Query 27335 ACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGG 27394 ||||| | |||||| |||||||| ||||| || | ||| || ||||| | Sbjct 9628062 ACTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAG 9628003 Query 27395 CGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 | ||| || || |||| || || || |||||| |||| Sbjct 9628002 CAGACATTATAATCCGCCGATCGTCAGGATTGTTCTTGAT 9627963 Score = 87.8 bits (96), Expect = 1e-12 Identities = 193/288 (67%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 ||||||| | || || ||||| || || | | |||||||| || || || | || Sbjct 31775337 CACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 31775396 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 | || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 31775397 ATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 31775456 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329 || || | ||| ||| | || | ||| || | ||| || |||||||| || || || Sbjct 31775457 ACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCAC 31775516 Query 27330 GTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 || ||||| | | ||| ||||||||||| || ||||| || | ||| || Sbjct 31775517 ATAGAACTGCGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGG 31775573 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 |||||| || | | |||| |||| || || || |||||| |||| Sbjct 31775574 GTTCCAAGCAGATAATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31775621 >seq18 Length=77673080 Score = 104 bits (114), Expect = 2e-17 Identities = 210/312 (67%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 |||||||| | || |||||||| || || | | |||| ||| || || || | || Sbjct 7477130 CACGTGATTTCGATACACGTGAGCATCCCCAATGACATGGATAAAATCACCAGGAACAAG 7477189 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 || || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 7477190 ATCGCACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 7477249 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329 ||||| ||||| ||| | || | ||| || | |||||||||||||| || || || Sbjct 7477250 ACCGAGGCCCATATCCGCTGAACGCTGATACATTTGACACGAGAGCTCCCCGTCCACCAC 7477309 Query 27330 GTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTT 27389 ||| ||||| | |||||| |||||||| ||||| | | || || || Sbjct 7477310 GTAGAACTGTGCGAACATGTGGCATGGAGGAAGCGCCATCAACTTGAGATCAGAAGGATT 7477369 Query 27390 CCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTT 27449 ||| || | | ||||| || | || || || |||||| |||| ||| | ||| Sbjct 7477370 CCAAGCCGATAATATGATACGACGATCATCAGGATTGTTCTTGATCTTGTCGATTACGTC 7477429 Query 27450 TTGCAGCTGATC 27461 | | |||||||| Sbjct 7477430 TAGGAGCTGATC 7477441 >seq3 Length=43957692 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 40985358 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 40985417 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAA 27335 ||||| || | || | ||| || | ||||||||||||||||| | |||||||| Sbjct 40985418 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 40985477 Query 27336 CTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 27392 ||| | | || |||||| |||||||| ||||| || | ||| || ||||| Sbjct 40985478 CTGTGCAAACAT---GTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 40985534 Query 27393 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 || ||| || || || | || || || |||||| |||| Sbjct 40985535 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 40985576 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 41004336 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 41004395 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAA 27335 ||||| || | || | ||| || | ||||||||||||||||| | |||||||| Sbjct 41004396 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 41004455 Query 27336 CTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 27392 ||| | | || |||||| |||||||| ||||| || | ||| || ||||| Sbjct 41004456 CTGTGCAAACAT---GTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 41004512 Query 27393 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 || ||| || || || | || || || |||||| |||| Sbjct 41004513 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 41004554 Score = 87.8 bits (96), Expect = 1e-12 Identities = 193/288 (67%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 ||||||| | || || ||||| || || | | |||||||| || || || | || Sbjct 31765897 CACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 31765838 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 | || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 31765837 ATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 31765778 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329 || || | ||| ||| | || | ||| || | ||| || |||||||| || || || Sbjct 31765777 ACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCAC 31765718 Query 27330 GTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 || ||||| | | ||| ||||||||||| || ||||| || | ||| || Sbjct 31765717 ATAGAACTGCGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGG 31765661 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 |||||| || | | |||| |||| || || || |||||| |||| Sbjct 31765660 GTTCCAAGCAGATAATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31765613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 193/288 (67%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 ||||||| | || || ||||| || || | | |||||||| || || || | || Sbjct 31809844 CACGTGAGTTCGATACACATGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 31809903 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 | || ||||| | |||| | || || ||||||||| || |||||||| || || Sbjct 31809904 ATCACACACATGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCAC 31809963 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329 || || | ||| ||| | || | ||| || | ||| || |||||||| || || || Sbjct 31809964 ACCAAGGCTCATATCCGCTGAACGCTGATACATCTGGCATGAGAGCTCCCCTTCCGCCAC 31810023 Query 27330 GTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 || ||||| | | ||| ||||||||||| || ||||| || | ||| || Sbjct 31810024 ATAGAACTGCGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGG 31810080 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 |||||| || | | |||| |||| || || || |||||| |||| Sbjct 31810081 GTTCCAAGCAGATAATCTGATACGCCGATCATCAGGATTGTTCTTGAT 31810128 >seq133 Length=227095 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||| ||||| | || | || || || ||||| ||| |||||||| ||||| || || Sbjct 171952 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 171893 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAA 27335 ||||| || | || | ||| || | ||||| || |||||||||| | |||||||| Sbjct 171892 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 171833 Query 27336 CTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 27395 |||| | |||||| |||||||| ||||| || | ||| || ||||| || Sbjct 171832 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 171773 Query 27396 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 ||| || || || | || || || |||||| |||| Sbjct 171772 CGACATTATAATCCGTCGATCGTCAGGATTGTTCTTGAT 171734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369463310165726