Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8 116 5e-21 seq6 114 2e-20 seq16 102 1e-16 seq159 87.8 2e-12 >seq8 Length=29345952 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | || | || |||| ||| | || | || |||||||| ||||||| Sbjct 15956780 CCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACCG 15956721 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| |||||||| | || || || || || || Sbjct 15956720 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGAA 15956661 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | |||||||| || || ||| ||| | ||||| |||||||||||| || || Sbjct 15956660 ACACCTATTCCCCCAGCTGATTTACTTATAACTGCGCACTCTTTCAATGTATCATATATT 15956601 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || || |||||| ||||| Sbjct 15956600 CCCTCAATGCTATCATCCTTCATG 15956577 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||| ||| || | |||||||| ||||| ||||||||| | | ||| | || || | Sbjct 19411249 GTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATGG 19411308 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||| || || || || || || || ||||| || || | || | ||| | | Sbjct 19411309 TAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAGC 19411368 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 |||||||||||||| |||||| || || | ||| || | ||||||| | || | Sbjct 19411369 ATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAGT 19411428 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| || ||||| |||| ||| ||| || | || ||||| || Sbjct 19411429 GTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 19411475 Score = 105 bits (116), Expect = 9e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||||| ||| || | |||||||||||||| |||||||| | ||| | | || Sbjct 15956446 AGTTCCTGAATTGAAGAGAGTCGGAGATGCATGAGTAAACCACCGCTGAGACATCAAATG 15956387 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||| |||| || || || || |||||| || ||||| || || | || | ||| | Sbjct 15956386 GTAAGTTTTGATTGCGGAATCAATGTCCTCTTTGTGAATGCCGACAGAAACCCTCATGAG 15956327 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| ||||||||| || || | |||||| | |||||| | || | Sbjct 15956326 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGACCTCTCGAG 15956267 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||| || ||||| |||| || ||| || | || ||||| || Sbjct 15956266 AGTTTTGAACCCAAAGTAGTCATACTCAAAATCACGATCATAAATGAT 15956219 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | || | || || | ||| |||| | || |||||||| |||||| Sbjct 19410922 CCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACCA 19410981 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||||||||| || ||| ||| |||||||| | || || || || || || Sbjct 19410982 TTAGATGTTCCATTCGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGAA 19411041 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || ||| ||| | || || ||||||||||| || || Sbjct 19411042 ACACCAATACCCCCAGCTGATTTACTTATAACTGCACACTCCTTCAATGTATCATAAATT 19411101 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || || || ||| ||||| Sbjct 19411102 CCCTCAATGCTATCGTCCTTCATG 19411125 >seq6 Length=38054609 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 |||||| | ||||| | |||||||||||||| || |||||| | ||| | || || Sbjct 36616049 AGTTCCAGAGTTAAAGAGAGTCGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 36616108 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||| || | | |||||| || || ||| || |||||| || || | || | ||| | Sbjct 36616109 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 36616168 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| ||||||||| || || | |||||| | ||||||| | || | Sbjct 36616169 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 36616228 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| || || || || |||| ||| |||||| | |||||||| || Sbjct 36616229 AGTCTTGAATCCGAAGTAGTCATATTCAAAGTCCCGGTCGTAAATGAT 36616276 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| || || | ||| | || || | ||| | || | || |||||||| |||||| Sbjct 36615722 ACCTCCTTGGTCAACATAACGAGCAGTATCATTGAACACCCGCAGCATTGGAACAATACC 36615781 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 |||||| |||||| || ||| ||| ||||||||| | || || || || || || Sbjct 36615782 ATTAGATTCTCCATTAGTGCCACGAATGTAACTTCCAGTAGCACGGATGTTGTGAACAGA 36615841 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || || || || ||| ||| | || || |||||||||||| || || Sbjct 36615842 AACACCAATACCCCCAGCTGATTTACTTATAACCGCACACTCTTTCAATGTATCATAAAT 36615901 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || |||||| ||||| | ||||| ||||| Sbjct 36615902 CCCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 36615943 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 77489 AAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 77548 ||||||||| |||||||| | || || || |||||||||||||| ||||| | | | || Sbjct 36614461 AAGAATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGCCTATGACGCATGTT 36614520 Query 77549 GGAAATTTTAG-CTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT 77605 ||| |||||| | ||| |||||||| | ||| | || || || ||||||||||| Sbjct 36614521 TGAAGTTTTAGCCGTCT-CCATAGGATAGTGATTCACATCAATTATCTTATTGAGATT 36614577 >seq16 Length=18736220 Score = 102 bits (112), Expect = 1e-16 Identities = 233/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || || ||||| ||||| || | ||||| || || ||||| Sbjct 836954 CACGCGAAGTCGCAGTGCAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTGAGC 836895 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA-GAAAAGAA 48259 || ||||| || ||||| || |||||||| || || | || ||| ||| || ||||| Sbjct 836894 CCCGGCATGAGCCCACGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTCCCCGAGAAGAA 836836 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT-- 48317 || ||||| ||| ||||| || | || ||||| | || | || | | || Sbjct 836835 GATCCCTTCCACGCAAGCAAACGCCACGA-TC-CTCTCGGCAAAGGCCTGTGATCCGTCG 836778 Query 48318 ATCCACCGTTGTG-CCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 |||||| || || |||| | ||||||||| || || || || || || || || Sbjct 836777 ATCCAC-GTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATCGTCTCGATCGCGCG 836719 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 |||||| || | || | |||| || | ||||||||||| | ||||| ||||| Sbjct 836718 GAAGAGATGGTCCCTCTCTCTATTATCCTTGATGTAAGTATCTAACAGGAGACTGTACAT 836659 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 |||||||| || || || || || ||||| || ||||| || Sbjct 836658 CTCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAA 836617 >seq159 Length=194462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | ||| | || | || |||||||| |||||| Sbjct 113796 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATACCA 113737 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| | ||||| || ||| ||| ||||||||| || || || || ||| || Sbjct 113736 TTAGAAGCACCATTAGTGCCACGAATGTAACTTCCAGAAGCACGGATGTTGTGAATTGAA 113677 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | ||||| || || || ||| || | || || |||||||||||| || || Sbjct 113676 ACACCTATACCCCCAGCTGATTTACTAATAACTGCACACTCTTTCAATGTATCATATATC 113617 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || |||||| ||||| | ||||| ||||| Sbjct 113616 CCCTCAATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 113576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694584171973440