Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq8 111 2e-19 seq6 105 1e-17 seq2 100 4e-16 seq18 95.1 2e-14 >seq8 Length=29345952 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | || | ||||||| ||| | || | || |||||||| ||| ||| Sbjct 15956780 CCTCCTTGGTCAACGTAGCGAGCAGTGTCATTGAATACCCGCAGCATTGGAACAATACCG 15956721 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||| |||||||| ||||| || || || || Sbjct 15956720 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGAA 15956661 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | |||||||| || || |||| || | || || ||||||||| ||||| || Sbjct 15956660 ACACCTATTCCCCCAGCTGATTTACTTATAACTGCGCACTCTTTCAATGTATCATATATT 15956601 Query 76934 CCCTCTATACTATCATCCATCATG 76957 ||||| || ||||||||| ||||| Sbjct 15956600 CCCTCAATGCTATCATCCTTCATG 15956577 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||| ||| || | || ||||| |||||||| |||||| | | ||| | || || | Sbjct 19411249 GTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATGG 19411308 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| || | | || ||||| || ||||| || |||| || | ||| | | Sbjct 19411309 TAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAGC 19411368 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 ||||||||||||| || || || || | ||| || | ||||||| | || | Sbjct 19411369 ATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAGT 19411428 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || ||||| |||| ||| ||| || | || ||||| || Sbjct 19411429 GTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 19411475 >seq6 Length=38054609 Score = 105 bits (116), Expect = 1e-17 Identities = 375/579 (65%), Gaps = 8/579 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || ||||||||||| |||| | || || ||||| || || || | | Sbjct 29820157 CACGCGAAGTCGCAGTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAC 29820098 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| || || ||||| || ||||| || || | ||| ||| || ||||| Sbjct 29820097 CCAGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTTCCGGAGAAGAAG 29820038 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGAA 46807 || ||||| || || || || || | ||||| || || ||| ||| | | Sbjct 29820037 ATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGATC--CGTCGA 29819980 Query 46808 TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 46867 ||||| | ||||| | ||||| ||| || ||||| || ||||| || || | Sbjct 29819979 TCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGTATGGTTTCAATCGCGCGGA 29819920 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 |||| || | || | | |||| || | || || || | | || || ||||| | Sbjct 29819919 AGAGGTGGTCCCTCTCTTTATTATCCTTGATGTACGTGTCGAGCAGGAGGCTGTACATCT 29819860 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 |||| || || || ||||| || ||||| || ||||| || | || || | | | Sbjct 29819859 CTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACTT 29819800 Query 46988 GTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 | || || | ||| || || | | |||||| || ||||| || || || Sbjct 29819799 GCACGTC-GGACATGAACCGGGAGGCGAGATTCTCTAAAACGATTCCGTCGGATGCGGCG 29819741 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAG-TCAGTTTATTCCAGTC 47105 || || || | || ||||| || || | || || || | | || || | |||||| Sbjct 29819740 AAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCTCCCAGTC 29819682 Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 | |||| || | ||| |||||||| || |||||||| || ||||| || || || Sbjct 29819681 GCGAGTGTCTTGGGAGAGATCGACTTCTTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTT 29819622 Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 ||||| | ||| || | | || |||||||| || || Sbjct 29819621 GTACATCTCCCAGATCTGCGGGTAGTGGATCGGGAACAT 29819583 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| | ||||| | || ||||||||||||||||||||| | ||| | || || Sbjct 36616049 AGTTCCAGAGTTAAAGAGAGTCGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATG 36616108 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||| || | | | ||| || |||||| || |||||| || |||| || | ||| | Sbjct 36616109 GTAAGTCTGGACAGCTGAATCAATATCCTGTTTATGAATGCCAACAGAAACCCTCATGAG 36616168 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| || || || | |||||| | ||||||| | || | Sbjct 36616169 CATGTGCTGAGGCCTTTCAACCACTTTCCCATGGACTTTCAAGAGGTATGATCTCTCAAG 36616228 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| || || || || |||| ||| |||||| | |||||||| || Sbjct 36616229 AGTCTTGAATCCGAAGTAGTCATATTCAAAGTCCCGGTCGTAAATGAT 36616276 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 |||||||||||||||||| || || || || |||||||||||||| ||||| | | | || Sbjct 36614461 AAGAATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGCCTATGACGCATGTT 36614520 Query 76144 GGAAATTTCAG-CTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| || | ||| ||||| || | ||| | ||| || || ||||||||||| Sbjct 36614521 TGAAGTTTTAGCCGTCT-CCATAGGATAGTGATTCACATCAATTATCTTATTGAGATT 36614577 >seq2 Length=25468329 Score = 100 bits (110), Expect = 4e-16 Identities = 374/581 (64%), Gaps = 9/581 (2%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || ||||||||||| || | || | ||||| || || |||||| Sbjct 22243719 CACGCGAAGTCGCAGTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGC 22243778 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || || ||||| |||||||| || || | ||| ||| || ||||| Sbjct 22243779 CCCGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAG 22243838 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGAA 46807 || ||||| || |||||| || || | ||||| || || ||| ||| | | Sbjct 22243839 ATCCCTTCCACGCACGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGATC--CGTCGA 22243896 Query 46808 TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 46867 ||||| | ||||| | ||||| ||| || ||||| || || || || || | Sbjct 22243897 TCCACTTCAAGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGA 22243956 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 ||||| || | || | | || || | || ||||||| || || || ||||| | Sbjct 22243957 AGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTATCTAGCAAGAGGCTGTACATCT 22244016 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 | || || || || ||||| || ||||| || ||||| || | || || | | || Sbjct 22244017 CCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACCT 22244076 Query 46988 GTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 | || || | ||| || || | | |||||| || ||||| || || || Sbjct 22244077 GCACGTC-GGACATGAACCGGGAGGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGCG 22244135 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT---TATTCCAG 47103 || || || | || ||||| || || | || || | || | | | |||| Sbjct 22244136 AAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGGTTGGTCTCCCAG 22244195 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 || | | |||| || | || ||||| || || |||||||| || || || ||||| Sbjct 22244196 TCGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTC 22244255 Query 47164 TTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 || ||||| | ||| || | | | || |||||||| || || Sbjct 22244256 TTGTACATCTCCCAGATCTGAGGGTAGTGGATCGGGAACAT 22244296 >seq18 Length=77673080 Score = 95.1 bits (104), Expect = 2e-14 Identities = 375/580 (65%), Gaps = 10/580 (2%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || ||||| || ||||||||||| ||||| || | ||||| || || || | | Sbjct 68188283 CACGCGAAATCGCAGTGAAGGCCTTCGTCTCTCGAGATCAGCTCGTTGGAGAAGGTCAAC 68188342 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 || ||||| || || ||||| |||||||| || || | || ||| | || || ||||| Sbjct 68188343 CCGGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATCG-AGCAGAAGCTACCGGAGAAGAA 68188401 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGA 46806 || ||||| || |||||| || || | ||||| || || |||| | | || Sbjct 68188402 GATCCCTTCCACGCACGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGGGACC--CATCG 68188459 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 |||||| | ||||| | ||||| ||| || || || || || || || || Sbjct 68188460 ATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAGGGGATGGTCTCGATCGCGCGG 68188519 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 |||||| || | || | | || || | || || |||| | || || ||||| Sbjct 68188520 AAGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCTAACAGGAGGCTGTACATC 68188579 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || ||||| || || || ||||| || ||||| || | || || | | | Sbjct 68188580 TCGGAGTGGATGTTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGAGACC 68188639 Query 46987 TGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || || | ||| || ||| | | ||||| || ||||| || || || Sbjct 68188640 TGGACGTC-GGACATGAACCGTGAGGCGAGGTTCTCGAGGACGATTCCGTCGGAGGCGGC 68188698 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAG-TCAGTTTATTCCAGT 47104 || || || | || ||||| || || | || || || | | || || | ||||| Sbjct 68188699 GAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCTCCCAGT 68188757 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 | | || | || | || ||||| || || |||||||| || ||||| || || | Sbjct 68188758 CGCGTGTGTCCTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCT 68188817 Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 | ||||| | ||| || | | |||||||| || || || Sbjct 68188818 TGTACATCTCCCAGATCTGCGGGTATTGGATTGGGAACAT 68188857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712847546766720