Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq9 224 1e-53 seq14 196 6e-45 seq8 102 1e-16 seq3 95.1 2e-14 >seq9 Length=62778564 Score = 224 bits (248), Expect = 1e-53 Identities = 435/638 (68%), Gaps = 7/638 (1%) Strand=Plus/Minus Query 186341 CAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCC 186400 |||| | || | || |||||||| || ||||| |||||| || || || || || || Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 186401 TCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATT 186460 || || || || |||||||| | || ||||| || || || || ||| |||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 186461 CCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGT 186520 | | | || ||||||| || || || ||| | ||||| |||| || ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 186521 AGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATAC 186580 || ||| | ||||| | |||||| | | || || |||||| |||||||| ||||| Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAG-AAATAT 56234711 Query 186581 TCTTTA--TGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAA 186638 | |||| |||| |||| || ||||| | ||| || || | | | |||| Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 186639 GAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCG 186698 |||||||| ||||| |||||||| || ||| | || ||||||| ||||| || ||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 186699 TTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGTCTTTGG 186758 ||| |||||| | |||| | || ||||| ||| | ||||| || || | ||| | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 186759 ACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTTGTAAGT 186818 | | | ||| || | ||||| ||| | ||||| |||| |||| ||| | Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 186819 CAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTA 186878 || || | | ||||| || ||||| || || || || |||||||| || ||||| || Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTATACTAAAAATATTCTT 56234412 Query 186879 TTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGAT---CAACCACATGAAAACTTT 186935 || || |||||| | || | |||||||| | |||| || || ||||||||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 186936 GTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 |||| |||| || || || ||| | || | | |||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 56234314 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/226 (72%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 183368 GAAACAACATCATCTCTGGTGCAGTTGTTCCTTCT-TC-CAACGCAAT-TGGACTTCACT 183424 ||||||| || | || |||||| || || || || || || || || ||| | || | Sbjct 10190797 GAAACAATATTAGTTCCGGTGCA-TTATTTCTACTGTCTCAGGGCTATGTGGTTTGCATT 10190855 Query 183425 TCTATCCCATCTGGGAAGCAGCATCACTCGATGAG-TGGCTGTATAACGGTGGTC-CTTA 183482 | || |||||||| |||| ||||| | ||||| ||||| || || ||||| |||| Sbjct 10190856 TTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTATACAAACGTGGTTGCTTA 10190914 Query 183483 CCAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGA 183542 |||| | || | ||||| | |||| || || || ||||||||||||||||| Sbjct 10190915 TGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGA 10190974 Query 183543 ATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTAT 183588 | | || |||||| ||||||||||||||||| |||||| ||| Sbjct 10190975 ACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 10191020 >seq14 Length=28343526 Score = 196 bits (216), Expect = 6e-45 Identities = 219/293 (75%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 183517 TTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATC 183576 || || || |||| | ||||||||||| | || | |||| ||||| ||||||||||| Sbjct 20844993 TTTTGTTATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATT 20845052 Query 183577 TGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTC 183636 |||||| ||| | |||||||| |||| | | ||| ||| || ||| || | Sbjct 20845053 GCTGTTGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATT 20845112 Query 183637 GGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATG 183696 | |||||| |||| |||| ||||||| || || ||| ||| || || |||| |||| Sbjct 20845113 GATCAAGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATG 20845172 Query 183697 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCT 183756 |||| |||||| | ||||||||||| || |||||||| || |||||| | ||||| ||| Sbjct 20845173 GTTGTATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCT 20845232 Query 183757 GGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTC 183809 ||||| ||||| || ||||| || ||||| ||||| |||| ||||| | ||| Sbjct 20845233 GGTGTATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAATTTC 20845285 >seq8 Length=29345952 Score = 102 bits (112), Expect = 1e-16 Identities = 130/173 (75%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 183659 GTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACA 183718 ||||||| || | ||| ||| || || |||| |||| |||| ||||| || ||||||| Sbjct 6844673 GTATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACA 6844731 Query 183719 ACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGT 183778 |||| || ||||||| ||| ||| | ||||| |||||||| ||||| || || || | Sbjct 6844732 ACATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTAT 6844789 Query 183779 TCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCAC 183830 | ||||| ||||| ||||| ||| |||| || | || || | |||||||| Sbjct 6844790 TTAGTGCTATGCATAGTTCTTTGG-AACTT-CTAGTTGAATCAGGGAAACCAC 6844840 >seq3 Length=43957692 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 170991 GAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGT 171050 || || || || || | ||||| ||||||||||||||| |||| ||| || || || Sbjct 14187997 GACGACCAGTACATATTGGATGCGGCTGAAGAAGCAGGAGTTGACTTGCCTTACTCTTGC 14188056 Query 171051 CGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCC 171110 | |||||||| ||||| ||||| ||||| || || ||||| || ||||| || || Sbjct 14188057 AGAGCTGGTGCGTGTTCCACCTGCGCTGGTAATATCGAGAGAGGCCAAGTTGACCAGTCT 14188116 Query 171111 GATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTT 171150 ||| || || ||||| |||||||| || || ||||| Sbjct 14188117 GATGGTTCGTTTCTTGAGGATGATCACATGGAGAAAGGTT 14188156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621994616273520