Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq9 253 2e-62 seq14 201 1e-46 seq8 107 2e-18 seq17 93.3 5e-14 seq28 84.2 2e-11 seq18 84.2 2e-11 seq390 82.4 9e-11 >seq9 Length=62778564 Score = 253 bits (280), Expect = 2e-62 Identities = 444/642 (69%), Gaps = 7/642 (1%) Strand=Plus/Minus Query 165533 CAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCC 165592 |||| | || | ||||||||||| |||||||| || ||| || ||||| || ||||| Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 165593 TCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATT 165652 || || ||||| |||||||| | || || || || || || || || ||||| Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 165653 CCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGT 165712 | | ||||| |||||||||| ||||| ||| | |||||| | ||||| ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 165713 AGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATAC 165772 || ||| | | |||| || || | | || ||| |||||| ||| ||||| |||| Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 165773 TTTGTA--TGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAA 165830 ||| || |||| ||||||| ||||| | || || ||| | | ||| | Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 || ||||||||||| |||||||| |||||||| || ||||| | || ||||| |||| Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGG 165950 || |||||| | |||| | || ||||||||| | ||||| || || | || | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 165951 ACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCT 166010 | ||| || ||| || | ||||| || | || || |||| |||| || | || Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 166011 CAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTC 166070 || || ||| | || || || ||||| || ||||||| |||||||| ||||| || || Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGA-CTTGAAACTTTCTATACTAAAAATATTCTT 56234412 Query 166071 CTTAATGAAGGACTCCGTGCCTGGTT---GGCTCCTGTAGACCAACCTCATGAGAACTTT 166127 | || ||||| | || | ||| | ||||| | | || |||||||| ||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 166128 GTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 | ||| |||| || || || ||| | || | | | |||||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCTTTAA 56234310 Score = 107 bits (118), Expect = 2e-18 Identities = 169/233 (73%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 164100 GAAACAACATCATCTCTGGTGCTGTTATCCCTTCT-TCTAACG-CTATC-GGTCTGCACT 164156 ||||||| || | || ||||| |||| || || ||| | | |||| ||| |||| | Sbjct 10190797 GAAACAATATTAGTTCCGGTGCA-TTATTTCTACTGTCTCAGGGCTATGTGGTTTGCATT 10190855 Query 164157 TCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAA-TGGCTCTACAACGGTGGTC-CTTT 164214 | ||| |||||||| |||| ||| | || ||| ||||| ||||| ||||| ||| Sbjct 10190856 TTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTATACAAACGTGGTTGCTTA 10190914 Query 164215 CCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGA 164274 |||| |||| | ||||| | |||| | | ||| ||||||||||||||||| Sbjct 10190915 TGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGA 10190974 Query 164275 ACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTC 164327 |||| || |||||| |||||||||||||||||| || ||||| || |||| Sbjct 10190975 ACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 10191027 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 ||| ||||||||||||||||||||| || |||||| |||||||||||||||||| || Sbjct 10184691 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 10184632 Query 164314 AGCATACTCTGCTC 164327 ||||| || |||| Sbjct 10184631 TGCATATTCAGCTC 10184618 >seq14 Length=28343526 Score = 201 bits (222), Expect = 1e-46 Identities = 218/289 (75%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 ||| |||| | |||||||||||||| || | |||| ||||| |||||||||||| || Sbjct 20844998 TTATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGT 20845057 Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 164373 ||||| || | |||||| || | || | || || ||| || ||| || | | ||| Sbjct 20845058 TGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCA 20845117 Query 164374 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGT 164433 ||| ||| |||||| |||||||| || |||||||| || ||||||| ||| | || Sbjct 20845118 AGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGT 20845177 Query 164434 CTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGT 164493 ||||| ||||||||||||| || |||||||| || || ||| | || ||||| ||||| Sbjct 20845178 ATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 20845237 Query 164494 GTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCT 164542 || ||||| ||||| || ||||| ||||| |||| ||||| | |||| Sbjct 20845238 ATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAATTTCT 20845286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| || |||||| ||| | || ||||| ||||||||||| || | ||| | || Sbjct 23727171 GTGCGACGACGACGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTA 23727230 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||| || || || || ||| | || ||||| | || || Sbjct 23727231 CTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGA 23727290 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| |||||| ||||| || |||||||| || | | || ||| |||| ||||| Sbjct 23727291 CCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCACTTG 23727350 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 161769 || ||||||| || ||| | |||||||| | | |||||| || Sbjct 23727351 TGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAGAGAAGAAGA 23727401 >seq8 Length=29345952 Score = 107 bits (118), Expect = 2e-18 Identities = 116/150 (77%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 164393 ATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAAC 164452 |||||||| | |||||||| || ||||||| ||| | || |||||||||||||||||| Sbjct 6844675 ATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAAC 6844733 Query 164453 ATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTC 164512 || || ||||||| ||| ||| | || ||||| ||||| || ||||| || || || Sbjct 6844734 ATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTT 6844791 Query 164513 AGTGCAATGCACGGTTCGCTGGTTACTTCT 164542 ||||| ||||| |||| ||| |||||| Sbjct 6844792 AGTGCTATGCATAGTTCTTTGG-AACTTCT 6844820 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| ||||||||| ||| | || ||||| || |||||||| ||| | || | ||| Sbjct 28015313 GTGCGAAGACGACGTCTACGTCCTCGACGCCGCGGAGGAAGCAGGTATCGATCTGCCCTA 28015254 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || |||| ||| ||||| || ||| ||||||||||| | | || Sbjct 28015253 CTCATGCCGTGCGGGATCTTGCTCGAGCTGCGCCGGGAAAGTCGTCTCTGGCTCAATTGA 28015194 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 161694 ||| | |||||| |||| | || |||||||| || Sbjct 28015193 CCAGACGGACCAGAGCTTCTTAGATGATGACCAGAT 28015158 >seq17 Length=44223734 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| ||||||||| ||| | || ||||| || |||||||| ||| | || | || Sbjct 42227458 GTGCGAAGACGACGTCTACGTCCTCGACGCTGCGGAGGAAGCAGGTATCGATTTGCCTTA 42227399 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 |||||| || ||||| |||| || ||||| || ||| ||||||||||| | | || Sbjct 42227398 CTCGTGCCGCGCAGGATCTTGCTCAAGCTGCGCAGGGAAAGTCGTCTCTGGCTTCATTGA 42227339 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 161694 ||| | |||||| |||| | ||||||||||| || Sbjct 42227338 CCAGACGGACCAGAGCTTCTTAGACGATGACCAGAT 42227303 >seq28 Length=1539140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 161539 GTGTGAAGACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTA 161598 ||| || |||||| ||| | |||||||| ||||||||||| || | ||| | || Sbjct 841702 GTGCGACGACGACGTCTACGTCCTTGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTA 841643 Query 161599 CTCGTGTCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGA 161658 ||| || ||||| || | || ||| || || || ||| | || ||||| | || || Sbjct 841642 CTCTTGCCGTGCTGGTTCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGA 841583 Query 161659 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTG 161718 ||| |||||| ||||| || |||||||| || | || ||| |||| ||||| Sbjct 841582 CCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTG 841523 Query 161719 TGTTTCTTATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 161769 || |||||| || |||| | |||||||| | | |||||| || Sbjct 841522 TGCGGCTTATCTTACTTTCGATGTTACCATTGAGACCCACAGAGAAGATGA 841472 >seq18 Length=77673080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||| ||||||||||| || |||||||| || | || ||||| ||| ||| | Sbjct 3654952 AGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTC 3655011 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 || | ||||||||| | || || || || || || || | ||||||||| ||| | Sbjct 3655012 ACTTTGGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATCGTATACTCATGGATTG 3655071 Query 165300 GCGAGTTCCTATCTTGAGGGT 165320 || ||||||||| | || ||| Sbjct 3655072 GCTAGTTCCTATTTAGAAGGT 3655092 >seq390 Length=101491 Score = 82.4 bits (90), Expect = 9e-11 Identities = 91/119 (76%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 165445 CTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAAC 165504 ||||||| || ||||| || || || ||| | |||||||| ||| | || || ||||||| Sbjct 2250 CTTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAAC 2309 Query 165505 TGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 165562 | || ||| || || | | || ||||| ||||| || || ||||||||||| ||||| Sbjct 2310 TTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC 2367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557586463752720