Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq9 233 2e-56 seq14 170 2e-37 seq28 100 3e-16 seq8 95.1 1e-14 seq390 91.5 2e-13 seq18 86.0 7e-12 seq11 84.2 3e-11 seq16 82.4 9e-11 >seq9 Length=62778564 Score = 233 bits (258), Expect = 2e-56 Identities = 438/638 (69%), Gaps = 7/638 (1%) Strand=Plus/Minus Query 179219 CAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCC 179278 |||| ||||| | || ||||||||||||||||| ||||| || || ||||| || ||||| Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 179279 TCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTT 179338 || || || || |||||||||| ||| ||||| || || || || || || || Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 179339 CCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGT 179398 | | ||||| | || || || || || ||| | || || | || || ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 179399 AGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGA-ACA 179457 || ||| | || |||| || || | || || ||| |||||||||| ||||| | | Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGAAATATT 56234710 Query 179458 CACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACACAAGAAG 179517 | | |||| | |||| |||||| ||| || || | || | |||| | Sbjct 56234709 TTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCCG 56234650 Query 179518 AGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCT 179577 | || || ||||| ||||| || || ||||| || ||||| | |||||||| || | Sbjct 56234649 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCTT 56234590 Query 179578 TCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGA 179637 | |||||| | |||| |||| ||||||||||| ||||| || || | ||| | ||| Sbjct 56234589 TTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGGA 56234530 Query 179638 CCTCTAGCATTGGTATTA-TTGGTCTTGCACTTAACCTTAGAGCTTATGACTTTGTTTCA 179696 | || | ||| || | ||||| || | ||||| | || |||| ||| |||| Sbjct 56234529 TGAGT-GCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 179697 CAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTA 179756 ||||| || | || || || ||||| || || || || |||||||| || || || || Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTATACTAAAAATATTCTT 56234412 Query 179757 TTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGAT---CAACCACATGAAAACTTT 179813 || || |||||| | || |||||||||| | ||| || || ||||||||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 179814 GTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 |||| |||| || || || ||| | || | | |||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCACGTGGAAGCACTCT 56234314 Score = 95.1 bits (104), Expect = 1e-14 Identities = 255/371 (69%), Gaps = 17/371 (5%) Strand=Plus/Plus Query 177637 GTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCG-CTGCTGCTATCTGTTTCAT 177695 || || ||||| ||||| ||||||||||||| | | | | ||| || | ||| || Sbjct 10190664 GTTGGATGGTTTGGTGTTTTGATGATCCCTACCTTAATTGACCGCTACTTCCGTTTTTAT 10190723 Query 177696 CGTCGCTTTCGTCGCTGCT-CCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCG-CT 177753 | | || | | |||||| |||| || || || || | || ||||||| || || Sbjct 10190724 --TAGATT-CATTGCTGCTTCCTCTAGTAGATATTGAGTGTATT-GTGAACCTGTTTTCT 10190779 Query 177754 GGTTCCCTGATGTATGGC--AACAACATCATTTCTGGTGCTGTTGTTCCTTCT-TCTAAC 177810 ||| | || | || || ||||| || | ||| ||||| || || || || ||| | Sbjct 10190780 GGT-CTCTTCTTTAAGGTGAAACAATATTAGTTCCGGTGCA-TTATTTCTACTGTCTCAG 10190837 Query 177811 G-CTAT-TGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAG-TGGCTC 177867 | |||| |||| | || || || |||||||| |||| || || | ||||| ||||| Sbjct 10190838 GGCTATGTGGTTTGCATTTTTACGCCATCTGG-AAGCTGCATCCGTTGATGAAATGGCTA 10190896 Query 177868 TACAATGGTGGTC-CTTTCCAACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATA 177926 ||||| ||||| ||| |||| || | | ||||| | | ||| | | || Sbjct 10190897 TACAAACGTGGTTGCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTA 10190956 Query 177927 CATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGC 177986 ||||||||||||||||||||| || ||| || ||||||||||| ||||| ||| || Sbjct 10190957 TATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGC 10191016 Query 177987 ATACTCTGCTC 177997 ||| || |||| Sbjct 10191017 ATATTCAGCTC 10191027 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||| | ||||| || | || || ||||| ||||||||||| | || | Sbjct 18477132 TTGAGTGCGACGACGACGTTTACGTCCTCGACGCTGCGGAGGAAGCAGGGATCGACTTGC 18477073 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| || ||| | || ||||| |||||||| ||| | | || || | Sbjct 18477072 CTTACTCTTGCCGTGCCGGTTCTTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGTTTTG 18477013 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || ||||| |||||||||||||| | |||||| || |||| | Sbjct 18477012 TTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGCAGGGTTTGTTCTCA 18476953 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 | |||| | |||||||| ||| | |||||||| | | |||||| || Sbjct 18476952 CCTGTGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAGAGAAGATGA 18476898 >seq14 Length=28343526 Score = 170 bits (188), Expect = 2e-37 Identities = 210/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 177925 TACATGGGTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTA 177984 || |||| | |||||||||||||| || | | || ||||| ||||| ||||| ||| Sbjct 20844999 TATATGGATTGTGAGTGGGAACTTAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTGTT 20845058 Query 177985 GCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAA 178044 ||||| || | ||| || || | || || ||| ||| | | | || | | |||| Sbjct 20845059 GCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATCAA 20845118 Query 178045 GGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTC 178104 || ||| ||||| |||||| || || ||| ||| || ||||||| ||| |||| Sbjct 20845119 GGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 20845178 Query 178105 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTC 178164 |||||| | ||||||||||| || |||||||| || |||||||| || || |||||||| Sbjct 20845179 TTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 20845238 Query 178165 TTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTC 178211 || || || ||||| || ||||| ||||| |||| ||||| | ||| Sbjct 20845239 TTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAATTTC 20845285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||| | ||||| || | || || |||||||||||||| ||| | || | Sbjct 23727167 TTGAGTGCGACGACGACGTCTACGTCCTCGACGCTGCTGAGGAAGCCGGAATCGACTTGC 23727226 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| |||||| | || || || |||||||| ||| | | || || | | Sbjct 23727227 CTTACTCTTGCCGTGCTGGTTCTTGCTCCAGCTGTGCAGGTAAAGTTGTGTCTGGATCTG 23727286 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || ||||| |||||||||||||| | || ||| ||| |||| | Sbjct 23727287 TTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCTGAAGGATTCGTTCTCA 23727346 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 |||||| | |||||||| ||| | |||||||| | | |||||| || Sbjct 23727347 CTTGTGCGGCTTATCCTACTTCTGATGTTACCATTGAGACCCACAGAGAAGAAGA 23727401 >seq28 Length=1539140 Score = 100 bits (110), Expect = 3e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 176152 TTGAGTGTGCTGACGATCAGTATATTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCA 176211 ||||||| | ||||| || | || || |||||||||||||| ||| | || | Sbjct 841706 TTGAGTGCGACGACGACGTCTACGTCCTTGACGCTGCTGAGGAAGCCGGAATCGACTTGC 841647 Query 176212 ACTACTCGTGCCGCGCTGGTGCCTGTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGG 176271 ||||| ||||| |||||| |||| ||||| |||||||| ||| | | || || | | Sbjct 841646 CTTACTCTTGCCGTGCTGGTTCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTG 841587 Query 176272 TAGATCAAAGCGATCAATCGTTCCTTGATGATGACCAGATCGATGCAGGTTTCATTCTGA 176331 | || || || || ||||| |||||||||||||| | | ||| ||| |||| | Sbjct 841586 TTGACCAGTCTGACCAGAGTTTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCA 841527 Query 176332 CTTGTGTTTCATATCCTACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 |||||| | |||| ||| |||| | |||||||| | | |||||| || Sbjct 841526 CTTGTGCGGCTTATCTTACTTTCGATGTTACCATTGAGACCCACAGAGAAGATGA 841472 >seq8 Length=29345952 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/172 (74%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 178062 TATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAA 178121 |||||| || | ||| ||| || ||||||| ||| |||| ||||| || |||||||| Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 178122 CATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTT 178181 ||| || ||||||| ||| ||||| || || |||||||| || || || || || || Sbjct 6844733 CATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 178182 CAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCAC 178232 ||||| ||||| ||||| ||| |||| || | || || | |||||||| Sbjct 6844791 TAGTGCTATGCATAGTTCTTTGG-AACTT-CTAGTTGAATCAGGGAAACCAC 6844840 >seq390 Length=101491 Score = 91.5 bits (100), Expect = 2e-13 Identities = 97/124 (78%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 179131 CTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAA 179190 ||||||| || ||||| ||||| ||||| | |||||||| ||| | || || |||||| Sbjct 2250 CTTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAAC 2309 Query 179191 TCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCT 179249 | || || ||| || | | || ||||| ||||||||||| || |||||||||||||| Sbjct 2310 TTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC- 2367 Query 179250 GTCT 179253 |||| Sbjct 2368 GTCT 2371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/124 (77%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 179131 CTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAA 179190 ||||||| || ||||| ||||| ||||| | |||||||| || | || || |||||| Sbjct 9887 CTTTTGTTGCTCTCCATGGTGCTTTCGCATTAATAGGTTTTTTGTTACGTCAATTTGAAC 9946 Query 179191 TCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCT 179249 | || || ||| || | | || ||||| ||||||||||| || |||||||||||||| Sbjct 9947 TTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGC- 10004 Query 179250 GTCT 179253 |||| Sbjct 10005 GTCT 10008 >seq18 Length=77673080 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | || || ||||||||||| |||||||| ||| Sbjct 3654925 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 3654984 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || ||| ||| || | | |||| |||||| |||| || ||||| || Sbjct 3654985 CTATTGCTCTTTCCTTGTGCCTATTTCACTTTGGGGGGTTGGTTCACAGGTACAACCTTT 3655044 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGG 179005 || || || | ||||||||| || | ||| ||| ||| | || || Sbjct 3655045 GTAACTTCATCGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGG 3655091 >seq11 Length=32467241 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 176178 CTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGT 176237 || || ||||| |||||||| || | || | ||||| |||||||| ||| |||| Sbjct 7692637 CTCGACGCTGCGGAGGAAGCCGGGATCGACTTGCCTTACTCTTGCCGCGCCGGTTCCTGC 7692578 Query 176238 TCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTT 176297 ||||| ||||| || ||| | | || || | || || || || || ||||| Sbjct 7692577 TCGAGCTGTGCGGGTAAAGTTGTGTCCGGATCTGTTGACCAGTCTGACCAGAGTTTCCTC 7692518 Query 176298 GATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAGCGAT 176357 |||||||||||||| | || ||| || |||| ||||||| | |||||||| ||| Sbjct 7692517 GATGATGACCAGATTGCTGAAGGGTTTGTTCTCACTTGTGCGGCTTATCCTACTTCTGAT 7692458 Query 176358 TGTGTGATTGAGACTGAGAAAGAAGAGGA 176386 | |||||||| | | |||||| || Sbjct 7692457 GTTACCATTGAGACCCACAGAGAAGATGA 7692429 >seq16 Length=18736220 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 176178 CTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGT 176237 || || ||||||||||||||||| | || | ||||| ||||| || ||| | || Sbjct 7499801 CTCGACGCTGCTGAGGAAGCAGGGATCGACTTGCCTTACTCTTGCCGTGCCGGTTCTTGC 7499860 Query 176238 TCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTT 176297 ||||| || ||||| ||| | | || || |||| || || || || ||||| Sbjct 7499861 TCGAGCTGCGCAGGTAAAGTTGTGTCTGGTTCGGTTGACCAGTCTGACCAGAGTTTCCTC 7499920 Query 176298 GATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTAC 176350 |||||||||||||| | || ||| || | || ||||||| | |||||||| Sbjct 7499921 GATGATGACCAGATTGCTGAAGGGTTTGTCCTCACTTGTGCGGCGTATCCTAC 7499973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596234554875360