Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20juncea_20var._20tumida_20[genbank_20GCA_5F001687265.1_202 016-09-23] 9,746 sequences; 954,861,368 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq9 275 7e-69 seq14 170 2e-37 seq8 89.7 6e-13 seq17 84.2 3e-11 seq28 82.4 9e-11 >seq9 Length=62778564 Score = 275 bits (304), Expect = 7e-69 Identities = 442/629 (70%), Gaps = 7/629 (1%) Strand=Plus/Minus Query 170975 CAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCC 171034 |||| ||||| | ||||||||||| || ||||| ||||| || || || || ||||| Sbjct 56234949 CAATACAATCACATTCTCTGGTCCAATTGCTGTTTTTGTTTCAGTCTTTCTAATTTATCC 56234890 Query 171035 TCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTT 171094 || || || || ||||||||| | ||| ||||| || || || || || || || Sbjct 56234889 ACTAGGTCAATCTGATTGGTTCTTTGTGCCTAGTTTTGGTGTAGCGGCTATATTTCGATT 56234830 Query 171095 CCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGT 171154 | | ||||| | ||||| || || || ||| |||||||| |||||||| ||||||| | Sbjct 56234829 CATCCTCTTTTTCCAAGGGTTTCATAATTGGGCACTGAATTCATTTCATTTGATGGGAAT 56234770 Query 171155 TGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATAC 171214 ||| ||| | || |||| || || | | || ||| |||||| ||| ||||| |||| Sbjct 56234769 TGCCGGTGTACTTGGCGCGGCTCTGTTATGCGCTATTGATGGTGCTACTGTAGA-AATAT 56234711 Query 171215 TTTGTA--TGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAG 171272 ||| || |||| |||||||| ||||| | || || ||| || | | ||| | Sbjct 56234710 TTTTTATCTGAAAATGGTGATGGTGCAAATAAATTATGTGCTTTTAACCCAATTCAAGCC 56234651 Query 171273 GAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCG 171332 ||||| || ||||| |||||||| ||||| || || ||||| | || ||||| || Sbjct 56234650 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACGAATCTTTGGGGCTGCT 56234591 Query 171333 TTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGG 171392 || |||||| | |||||| || ||||||||| | ||||| || || | ||| | || Sbjct 56234590 TTTTCCAATAAACATTGGTTACAATTCTTTATGTTATTTGTACCAGTAACTGGTTTAAGG 56234531 Query 171393 GTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGT 171452 | ||| ||| | || | ||||| ||| | || || | || |||| ||| | Sbjct 56234530 ATGAGTGCTCTTGTAATAGTAGGTCTAGCTTTGAACCTATGTGCCTATGGCTTCATTTCC 56234471 Query 171453 CAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTA 171512 || || | | ||||| |||||||| || || || || |||||||| || || || || Sbjct 56234470 CAAGAAATTTGTGCAGCGGAAGATCCGGACTT-GAAACTTTCTATACTAAAAATATTCTT 56234412 Query 171513 TTGAATGAAGGTCTTCGTGCATGGATGGC--ACCAGTA-GACCAACCACATGAAAACTTT 171569 || || |||||| |||| | |||||||| ||| | | || || ||||||||| || Sbjct 56234411 TTAAACGAAGGTATTCGCACTTGGATGGCGGCTCAGGATCAGCAGCCTCATGAAAACATT 56234352 Query 171570 GTGTTCCCAGAGGAAGTTCTACCTCGTGG 171598 | ||| | ||||| ||| |||| ||||| Sbjct 56234351 ATATTCACTGAGGAGGTTTTACCACGTGG 56234323 >seq14 Length=28343526 Score = 170 bits (188), Expect = 2e-37 Identities = 215/293 (73%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 169678 TTACATGGGTCGTGAGTGGGAATTGTCCTATC-GTCTGGGTATGCGCCCTTGGATCTGTG 169736 ||| |||| | ||||||||||| | | | || |||||||||| || |||||||| || Sbjct 20844998 TTATATGGATTGTGAGTGGGAACT-TAGTTTCTGTCTGGGTATACGTCCTTGGATTGCTG 20845056 Query 169737 TTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGC 169796 |||| || || | ||| ||||| | || | ||||||| || ||| ||| ||| | Sbjct 20845057 TTGCATATTCAGATCCTGTTGCAACTGCTATTGGTGTTTTCTTGATCTGCCCAATTGATC 20845116 Query 169797 AAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGG 169856 |||| || ||||| ||||||||| || ||||| || || || |||| ||| | | Sbjct 20845117 AAGGAAGTTTTTCTGATAGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGGTTG 20845176 Query 169857 TCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAG 169916 | |||||| ||||||||||||| || |||||||| || |||||| | ||||| || || | Sbjct 20845177 TATTCCAAACTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTG 20845236 Query 169917 TGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGT 169969 | || || || ||||| ||||| || ||||| || ||| || | ||| ||| Sbjct 20845237 TATTCGGCGGCTCTCTTTTTAGTGCTATGCATAGTTCCCTGGTAATTTCTAGT 20845289 >seq8 Length=29345952 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||| |||| ||||| || |||||||| ||| | || | |||||| |||||||| || Sbjct 28015297 TACGTCCTCGACGCCGCGGAGGAAGCAGGTATCGATCTGCCCTACTCATGCCGTGCGGGA 28015238 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 |||| ||| ||||| || ||| || |||||||| | | || || | || || | Sbjct 28015237 TCTTGCTCGAGCTGCGCCGGGAAAGTCGTCTCTGGCTCAATTGACCAGACGGACCAGAGC 28015178 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAAC 167626 ||| | || ||||| || || | ||| || | | |||||||||||| | || ||||| Sbjct 28015177 TTCTTAGATGATGACCAGATGGGCGAGGGGTATGTCCTCACCTGTGTGGCTTACCCAAC 28015119 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/132 (75%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 169816 TATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAA 169875 ||||||||| | ||||| || || || |||| ||| | || ||||| ||||||||||| Sbjct 6844674 TATGCCTCTAGA-ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAA 6844732 Query 169876 CATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTT 169935 ||| || ||||||| ||| ||| | ||||| || || || || || || || || || Sbjct 6844733 CATTCTTATGCACCATTTC--AATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 6844790 Query 169936 TAGCGCGATGCA 169947 ||| || ||||| Sbjct 6844791 TAGTGCTATGCA 6844802 >seq17 Length=44223734 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||| |||| ||||| || |||||||| ||| | || | ||||||||||| ||||| Sbjct 42227442 TACGTCCTCGACGCTGCGGAGGAAGCAGGTATCGATTTGCCTTACTCGTGCCGCGCAGGA 42227383 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 |||| || ||||| || ||| || |||||||| | | || || | || || | Sbjct 42227382 TCTTGCTCAAGCTGCGCAGGGAAAGTCGTCTCTGGCTTCATTGACCAGACGGACCAGAGC 42227323 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAAC 167626 ||| | |||||||| || || |||||| | | || ||||||||| | || ||||| Sbjct 42227322 TTCTTAGACGATGACCAGATGAGCGAAGGGTATGTCCTTACCTGTGTGGCTTACCCAAC 42227264 >seq28 Length=1539140 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||| |||||||||| ||||||||||| || | ||| | ||||| |||||||| || Sbjct 841686 TACGTCCTTGACGCTGCTGAGGAAGCCGGAATCGACTTGCCTTACTCTTGCCGTGCTGGT 841627 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 | || ||| || || || ||| | | ||||| | || || || || || Sbjct 841626 TCCTGCTCGAGCTGTGCAGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 841567 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATC 167622 ||||| || ||||| || ||||| ||||| ||| ||||||| |||| | | |||| Sbjct 841566 TTCCTCGATGATGACCAGATTGCGGAAGGATTCGTTCTCACTTGTGCGGCTTATC 841512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592126255429920