Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq82 226 3e-54 >seq82 Length=657493 Score = 226 bits (250), Expect = 3e-54 Identities = 349/492 (71%), Gaps = 17/492 (3%) Strand=Plus/Plus Query 141627 AAGTAATGTAATCGTTTTTTCC-----AAAACGTTCCAT-CATCAAATCATTCAGTTGAA 141680 || ||||||||| |||||||| | || || || |||||| | ||| | ||| | Sbjct 460781 AAATAATGTAATT-TTTTTTCCTGATAATAATCTTTGATACATCAATTTATTAATTTGTA 460839 Query 141681 CACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAAACGA 141740 | ||||||| | ||||| | | |||||||| | ||| | |||||||| ||||| | Sbjct 460840 CTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATTTTTTAAAACTA 460899 Query 141741 GAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGAA 141800 | | |||||| ||| |||||||| || |||||| | ||| || || || || | || Sbjct 460900 ATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGCTCCACCTCTAA 460959 Query 141801 TTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATAACAC 141860 ||| || || ||||| ||||| || ||| | ||||||||||| ||||||||||| || Sbjct 460960 CTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAAAGGAATACAAC 461019 Query 141861 CAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATCATACCAACGT 141920 ||||||| | |||| || | | ||| | |||| | |||||||| | ||| | | Sbjct 461020 CAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAATTTTTCCAGCAT 461079 Query 141921 TAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGA---AGCAGAAGCCTTAT 141977 ||||||||||||| || |||| ||| | ||||| ||||| || || || ||| ||| Sbjct 461080 TAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGTAGTAGCGTTA- 461138 Query 141978 TGATAGACTTCAATGAATCTCCTGCC--TCAATAACAACACATGAACTAAACTGTCGAGT 142035 ||||| | | || | || | | ||||| | ||||||||| ||||| |||||||| Sbjct 461139 --ATAGAATCTA--GATTATCATCACATTCAATTAAAACACATGAGCTAAATTGTCGAGT 461194 Query 142036 CGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTTGATACTGC 142095 ||||| | | |||| |||||| || || || || ||||| | |||||| | || Sbjct 461195 AGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTTGAAATGGC 461254 Query 142096 TTCATAAAAACG 142107 | ||||||||| Sbjct 461255 ATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540352305780480