Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_000929.1 Length=36717 Score E Sequences producing significant alignments: (Bits) Value seq1048 159 8e-35 >seq1048 Length=3623 Score = 159 bits (176), Expect = 8e-35 Identities = 211/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 34581 GTGTTGTAGTCTCGTCGCCAGCCAGGAGCATAAGCATCACCATGATTAATATAAGTGAAT 34640 |||||||| |||| |||||| |||| ||||| || ||| ||||||||||| ||||| Sbjct 1516 GTGTTGTAATCTCTGCGCCAGGCAGGGGCATACGCGCTACCGTGATTAATATAGGTGAAC 1575 Query 34641 TGAGCGTTAGTGATTCCGCCGCCGCTGGACGTACTCGGCGTAGTAACGCGTATGGTCATT 34700 ||||| | || || || ||| | | ||| | ||||||||||| || ||||||||| Sbjct 1576 TGAGCACAGGCAATCCCACCACCGGTAGTCGTTGTAGGCGTAGTAACTCGGATGGTCATT 1635 Query 34701 GCGCCGCGAGTGCCAATAACTTCCACCACAGCACCTGCAAGACAAATATTTCCGCAACCT 34760 ||||| || || | ||| || | || ||||| |||||||| ||||| ||| |||| Sbjct 1636 GCGCCTTCGGTACCTAAAACCTCGATAACCGCACCAGCAAGACAGATATTACCGACACCT 1695 Query 34761 GTATCTGTAATGACCTTATTGTTTGCATAAGCCCATGAGCCTTTGCACATCCAGTAAGGA 34820 ||||| || || | ||||||| ||||| | ||| || || || ||||||||| || Sbjct 1696 GTATCAGTGATAATTTTATTGTCGGCATATGACCAGGAACCCTTCATCATCCAGTACGGC 1755 Query 34821 TGGTTAAATGCCCCCTGACTCTCCAGCCACGAAATAAATTGTGCGGTTGTCCA 34873 | || || || | || |||||| | ||||||| ||||| ||||| Sbjct 1756 ACTTCGAAAGCACCACGCTCCTTCAGCCATGCGATAAATTCAGCGGTAGTCCA 1808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117370882128448