Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 >seq6 Length=47127078 Score = 93.3 bits (102), Expect = 4e-14 Identities = 242/363 (67%), Gaps = 11/363 (3%) Strand=Plus/Minus Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 || || |||||||||||||| || || |||||||||| ||| | |||||||| || Sbjct 44872419 ATCAGGCACGCGAAGTCGCAGTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAG 44872360 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGA 16314 ||||| || ||||| ||||| ||||| | |||||| |||| |||| || || || Sbjct 44872359 GTTAAACCCGGCATGAGCCCTCGCTTCTTCAGCCAGAAGATCG-AGCAGAAGCTACCGGA 44872301 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGT---AGCATC 16371 ||||| || || || || | ||||| || | | | || ||| | || || ||| Sbjct 44872300 GAAGAAGATCCCTTCCACGCAAGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAG-ATC 44872242 Query 16372 TTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTC 16431 | || ||||| ||| |||||| ||| || | | ||| || ||||| Sbjct 44872241 CGT----CG-ATCCACTTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTC 44872187 Query 16432 TATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 || || || | | || | || | |||| | || ||||| || | ||| | Sbjct 44872186 AATCGCGCGGAAGAGGTGGTCCCTCTCTTTGTTATCCTTGATGTACGTGTCGAGCAGGAG 44872127 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 |||||||| |||||||| || ||||| || || ||||| || || |||||| || || Sbjct 44872126 GCTGTACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGC 44872067 Query 16552 CTC 16554 ||| Sbjct 44872066 CTC 44872064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511405603672320