Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq114 113 4e-20 seq2 113 4e-20 seq1 104 2e-17 seq3 84.2 2e-11 >seq114 Length=481428 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| ||||| || |||| ||| |||||||||||||||||||| || | || Sbjct 455310 ATGGCACTTCCTCCTTGCCACATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTCG 455369 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| |||||||| |||||||| | Sbjct 455370 TGTCAAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTCA 455429 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT 19123 || |||||||||| | ||| |||| ||||| Sbjct 455430 TACTCACTTCTTACATGCATCCTAGCTCATGT 455461 >seq2 Length=31488241 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| ||||| || |||| ||| |||||||||||||||||||| || | || Sbjct 13040032 ATGGCACTTCCTCCTTGCCACATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTCG 13040091 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || ||| | || ||| | || | |||||||| ||||| |||||||| |||||||| | Sbjct 13040092 TGTCAAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTCA 13040151 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGT 19123 || |||||||||| | ||| |||| ||||| Sbjct 13040152 TACTCACTTCTTACATGCATCCTAGCTCATGT 13040183 >seq1 Length=46747018 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18927 CGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCA 18986 ||||| || || || ||| |||||||||| || | | |||| ||| |||||| Sbjct 3084137 CGACGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGCTGATGGCACTTCCTCCA 3084196 Query 18987 TGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAG 19046 || |||| ||| ||||||||||||||| || || || | || || ||| | || ||| Sbjct 3084197 TGCCACATGTTTGCTCAGTTTTACGTTGCCAATGGAGAGCTTTCATGTCAAATGTATCAG 3084256 Query 19047 AGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACC 19106 | || | |||||||| ||||| |||||||| |||||||| ||| | |||||||| Sbjct 3084257 CGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGCCTCATACTCCCTTCTTACA 3084316 Query 19107 TACATAGTAGCGCATGT 19123 | || | || ||||| Sbjct 3084317 TGTATCCTCGCTCATGT 3084333 >seq3 Length=51870232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 185/269 (69%), Gaps = 10/269 (4%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || ||||| || |||| ||| ||||| || || || | || || | || Sbjct 35473268 ATGGCGCTGCCTCCGTGCCACATGTTTGCACAGTTCTATGTGGCGGAAGGGGAGCTTTCA 35473327 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||| | | || ||| | || | |||||||||||||| || ||||| ||||||||| Sbjct 35473328 TGCAAGATGTATCAGCGTTCAGCGGATATGGGCCTTGATGTGCCGTTTAACATTGCTTCC 35473387 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATT 19151 || | |||||||| | ||| |||| || || | ||| |||| ||||| || Sbjct 35473388 TACTCTCTTCTTACTTGCATGCTAGCTCACGTGTGTGATCTTGTTCCCGGTGATTTTATC 35473447 Query 19152 CATACAATGGGGGATGCACATATTTACTTGAA-TCATATAGATG-CTTTAAAAGTGCAGC 19209 ||| ||| |||||||| ||| | || | ||| ||| | || | || | ||| ||||| Sbjct 35473448 CATGTAATTGGGGATGCTCATGTGTA-TCGAACTCACGT-GAGGCCTCTCCAAGAGCAGC 35473505 Query 19210 TAGCTC-GATCC--CCAAAACCTTTTCCT 19235 | || || || ||||||||||||||| Sbjct 35473506 T---TCAGAACCCACCAAAACCTTTTCCT 35473531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399497300317920