Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 seq1 91.5 1e-13 >seq3 Length=51870232 Score = 100 bits (110), Expect = 2e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 101708 TGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATC 101767 |||||||| || || ||||||||| || || || || |||| | || ||||| | | Sbjct 35473467 TGAGCATCCCCAATTACATGGATAAAATCACCGGGAACAAGATCACACACGTGAGCTAGC 35473408 Query 101768 ATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCT 101827 |||||||| | |||||| ||| |||||||||||| ||||| | | |||||||| ||| Sbjct 35473407 ATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACATCAAGGCCCATATCCGCT 35473348 Query 101828 GATCTTTGATACAGTTGACAGGAAAGCT 101855 || | ||||||| | || ||||||| Sbjct 35473347 GAACGCTGATACATCTTGCATGAAAGCT 35473320 >seq1 Length=46747018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 101755 GACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAA 101814 ||||||||| | || || || | ||| || || ||||||||||| || || || | Sbjct 3084334 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 3084275 Query 101815 CCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 |||||||||||||| | ||||||| |||||| ||||||| ||||| || ||||| Sbjct 3084274 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 3084215 Query 101875 TTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 ||| || | || || || || | |||| || ||| ||| ||||||||| Sbjct 3084214 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 3084155 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT 101971 |||||| |||| || ||| || || ||||| || Sbjct 3084154 CGACATTATAATCCGTCGATC-GTCAGGATTGTTCTT 3084119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361245141817376