Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 4e-14 seq1 91.5 1e-13 seq6 87.8 2e-12 seq362 86.0 5e-12 seq14 86.0 5e-12 seq3 82.4 7e-11 >seq10 Length=21498587 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || || ||||| ||||| || || ||| ||| || | | Sbjct 20066429 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 20066370 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| ||| | | | | | ||| || ||| || || ||||| | || || || Sbjct 20066369 AGACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 20066310 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||||| ||||| || || ||||| || || ||| | ||| |||| |||||||| Sbjct 20066309 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 20066250 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||| || ||||||||| | ||||| || Sbjct 20066249 CATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCG 20066214 >seq1 Length=46747018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || ||||||||||| || || ||| |||||||| || || |||||||| Sbjct 38965042 GACCAGCAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGAT 38964983 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| ||||||||||| ||||| |||||| |||| Sbjct 38964982 TACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 38964948 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||||||| | || || |||||||| || || || || || ||| | | Sbjct 38965384 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACTTTGGAGGTTGAAAGCTCC 38965325 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || || || || ||||| ||| | || ||| || Sbjct 38965324 GACACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 38965265 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || ||| |||||||| || || ||||||||||||| Sbjct 38965264 CAGAGGTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGATTACAAC 38965205 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||| ||||| |||||| |||| Sbjct 38965204 ATTCAGAAGGAGTCTACGCTTCACTTGGT 38965176 >seq6 Length=47127078 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| || || || |||||||| || || || ||||||| || || |||| ||| Sbjct 30236695 GATCAGCAGAGGCTCATCTTTGCCGGTAAGCAGTTGGAAGACGGCAGGACCTTGGCTGAT 30236636 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| |||||||| ||||| |||||| |||| || || |||| ||||| Sbjct 30236635 TACAATATCCAGAAGGAGTCTACGCTTCACCTGGTCTTGCGTCTACGTGGAGG 30236583 >seq362 Length=95773 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| |||| || ||||| ||||| || |||||| ||| ||| | | Sbjct 39064 AATGCAAATATTTGTCAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTC 39123 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | ||| || ||| || || ||||| | || || || Sbjct 39124 AGACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 39183 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| ||||| ||||| || || ||||| || || ||| || | || |||||||| Sbjct 39184 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACGCTTGCAGATTACAA 39243 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||| || ||||| || |||| Sbjct 39244 CATTCAGAAGGAGTCGACTCTGCATTTGGT 39273 >seq14 Length=60807478 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||||||| | || |||||| ||||| || ||||| || || || || || ||| Sbjct 8832320 GACAAAGAAGGTATTCCACCAGATCAGCAAAGGCTCATCTTCGCCGGTAAGCAGCTTGAA 8832379 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| || ||| |||| |||||||| || ||||| || ||||||||||| Sbjct 8832380 GATGGCAGAACCCTGGCGGATTACAACATCCAGAAAGAGTCTACTCTTCA 8832429 >seq3 Length=51870232 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || ||||||||||| || || || |||||||| || |||| ||| Sbjct 22921259 GACCAGCAGAGGCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGCACCTTGGCGGAT 22921200 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| || || ||||||||| |||| || || |||| ||||| Sbjct 22921199 TACAATATTCAGAAAGAGTCGACTCTTCACTTGGTCTTGCGTCTACGTGGAGG 22921147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428328816805280