Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq16 120 4e-22 >seq16 Length=39632211 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||| |||||| | | || ||||| || ||||| | ||| |||| || || || Sbjct 38024969 AGAGGCCTCACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGACAAAATCACCA 38025028 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTG 145803 || | || | | ||| |||| |||| | || || || |||||| || ||||| Sbjct 38025029 GGGACAAGTTCACACACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTA 38025088 Query 145804 AAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCG 145863 || ||||| || || ||||| ||| |||| ||||| |||| |||||| ||||||||||| Sbjct 38025089 AACGGCACACCAAGGCCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCT 38025148 Query 145864 CCCGCCACGTAGAACTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 ||||||| |||||||| ||| | | |||||| || || || ||||| Sbjct 38025149 TCCGCCACATAGAACTGCGCA-AACATGTGGCACGGAGGAAGCGCCAT 38025195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590066650679040