Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 seq6 87.8 1e-12 seq10 84.2 2e-11 seq3 82.4 6e-11 >seq1 Length=46747018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||||||| | || || |||||||| || || || || || ||| | | Sbjct 38965384 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACTTTGGAGGTTGAAAGCTCC 38965325 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || |||| || || || ||||| ||| | || ||| || Sbjct 38965324 GACACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 38965265 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || |||||||||||| || || ||||||||||||| Sbjct 38965264 CAGAGGTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGATTACAAC 38965205 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||| ||||| ||||| |||||| |||| Sbjct 38965204 ATTCAGAAGGAGTCTACGCTTCACTTGGT 38965176 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || || || || ||||||||||| || || |||||||||||| || || |||||||| Sbjct 38965042 GACCAGCAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGAT 38964983 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||| ||||| ||||| ||||| |||||| |||| Sbjct 38964982 TACAACATTCAGAAGGAGTCTACGCTTCACTTGGT 38964948 >seq6 Length=47127078 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| || || || |||||||| || || || |||||||| || || |||| ||| Sbjct 30236695 GATCAGCAGAGGCTCATCTTTGCCGGTAAGCAGTTGGAAGACGGCAGGACCTTGGCTGAT 30236636 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| || ||||| ||||| |||||| |||| || || |||| ||||| Sbjct 30236635 TACAATATCCAGAAGGAGTCTACGCTTCACCTGGTCTTGCGTCTACGTGGAGG 30236583 >seq10 Length=21498587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||||||||| | || || ||||| ||||| || || ||| ||| || | | Sbjct 20066429 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 20066370 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | | | | ||| || ||| || || ||||| | || || || Sbjct 20066369 AGACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 20066310 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| ||||| ||||| || || ||||| | || ||| | ||| |||| |||||||| Sbjct 20066309 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 20066250 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || ||||| || ||||||||| | ||||| || Sbjct 20066249 CATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCG 20066214 >seq3 Length=51870232 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || || || || ||||||||||| || || || ||||||||| || |||| ||| Sbjct 22921259 GACCAGCAGAGGCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGCACCTTGGCGGAT 22921200 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||| || || || ||||||||| |||| || || |||| ||||| Sbjct 22921199 TACAATATTCAGAAAGAGTCGACTCTTCACTTGGTCTTGCGTCTACGTGGAGG 22921147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410789910937664