Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 >seq3 Length=51870232 Score = 104 bits (114), Expect = 2e-17 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 97032 AAGCTGCTCTGTGAGAG-CATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGT 97090 |||||||||| ||||| | ||| |||| | ||| | |||||||| || | | Sbjct 35473507 AAGCTGCTCTTGGAGAGGCCTCAC-GTGAGTTCGATACACATGAGCATCCCCAATTACAT 35473449 Query 97091 GAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAAT 97150 | ||||| || || ||||| | |||| || || || | ||| ||||| | ||||| | Sbjct 35473448 GGATAAAATCACCGGGAACAAGATCACACACGTGAGCTAGCATGCAAGTAAGAAGAGAGT 35473389 Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210 || |||||||||||| ||||| | || |||||||| ||||| | ||||| | || | Sbjct 35473388 AGGAAGCAATGTTAAACGGCACATCAAGGCCCATATCCGCTGAACGCTGATACATCTTGC 35473329 Query 97211 AGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCA 97270 | ||||||| || || |||||| ||||| || | || || || |||| ||||| Sbjct 35473328 ATGAAAGCTCCCCTTCCGCCACATAGAACTGTGCAAACATGTGGCACGGAGGCAGCGCCA 35473269 Query 97271 T 97271 | Sbjct 35473268 T 35473268 Score = 82.4 bits (90), Expect = 5e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 97408 GCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCA 97467 || ||||| || |||||||| ||||||||||||||||||||||| ||||| ||||| ||| Sbjct 35473045 GCACCAAAGTGTCTCCATTGAAATCCATAAACAGGTCCAAGGTCGCCTTCCTCTCTCTCA 35472986 Query 97468 CAGAAACCAA 97477 | | ||||| Sbjct 35472985 CTCAGACCAA 35472976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346778184432320