Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_002167.1 Length=39732 Score E Sequences producing significant alignments: (Bits) Value seq477 1150 0.0 >seq477 Length=38297 Score = 1150 bits (1274), Expect = 0.0 Identities = 2059/2990 (69%), Gaps = 105/2990 (4%) Strand=Plus/Minus Query 2210 TTAACGATGAACGGATACTGCAAATTTCGACTGTGTGGCGCTGCGTGAGCCTGATTTCAA 2269 ||| ||||||||| | |||| || || || ||| ||| | || ||||| |||| Sbjct 19374 TTACCGATGAACGTAATATGCAGATCAGCACCGTTTGGTCTTGCATAAGACTGATATCAA 19315 Query 2270 CGCTCACGGCATGCTTACCGCTTGATGTCTTCGAAACAGACCAGAATGACAACCGTAAAA 2329 | | || |||| | ||||| ||||| || ||||| | |||||| | ||| | | Sbjct 19314 CCGTGACAGCATCTCTCCCGCTAGATGTGTTTGAAACTGTT---AATGACCAACGTCAGA 19258 Query 2330 AAGT-GGATTTGAGCAATCCACTGGCGCGACTGCTGCGCTACTCACCGAATCAGTACATG 2388 |||| ||| || ||||| |||||||| || ||||| | | || ||| | | ||| Sbjct 19257 AAGTCGGAAACGAA-AATCCCCTGGCGCGCCTCCTGCGATTCCGTCCAAATAATTTTATG 19199 Query 2389 ACCGCCCAAGAATTCAGGGAGGCCATGACGATGCAGCTCTGTTTCTACGGTAACGCATAT 2448 ||||| | ||||| | || || ||||| ||||| |||||| || || || || || Sbjct 19198 ACCGCGCTTGAATTTCGCGAAGCGATGACAATGCAACTCTGTGCATATGGGAATGCGTAC 19139 Query 2449 GCACTTGTGGACCGCAACAGCGCAGGTGACGTGATCAGCCTTCTCCCGCTTCAGTCTGCC 2508 || | || || || || |||| ||||| ||||||||| | | ||| | | ||| Sbjct 19138 GCCCACGTTGAGCGAAATAGCGTTGGTGATGTGATCAGCATGGTTCCGTTAATGAGCGCC 19079 Query 2509 AATATGGATGTGAAGCTC-GT-----CGGaaaaaaaGTGGTTTATCGCTATCAACGCGAC 2562 |||||||||||| ||| || ||| ||||| || |||| |||||| |||| || Sbjct 19078 AATATGGATGTGCGACTCAGTGATAACGGCAAAAACGTTATTTACCGCTATAAACGAGAT 19019 Query 2563 AGCGAATACGCCGACTTTTCGCAGAAAGAGATTTTTCACCTTAAAGGCTTCGGATTCACC 2622 | |||||||| ||||| || ||||| ||||| || || ||||| || || || | | Sbjct 19018 ACGGAATACGCAGACTTCAAGCCTAAAGAAATTTTCCATCTGAAAGGTTTTGGTTTTAAC 18959 Query 2623 GGGCTTGTAGGCCTGTCACCCATTGCTTTTGCCTGT---AAATCGGCAGGTGTGGCAGTT 2679 || || || || ||||| || | || || | || |||||||| |||||||| | Sbjct 18958 GGTCTAGTGGGGCTGTCTCCGTTGGCCTT---CAGTGCGAAATCGGCCGGTGTGGCGATC 18902 Query 2680 GCGATGGAGGACCAGCAGCGAGATTTCTTTGCCAACGGCGCCAAGTCTCCGCAAATCCTC 2739 || ||||| ||| | ||||| || || ||||| || ||||||||||| |||||||| || Sbjct 18901 GCTATGGAAGACAATCAGCGCGAGTTTTTTGCTAATGGCGCCAAGTCACCGCAAATTCTG 18842 Query 2740 TCAACTGGCGAAAAAGTGCTAACTGAACAGCAGCGCTCCCAGGTCGAAGAGAACTTCAAA 2799 || | | || ||||| ||| || | ||||| || | ||||| |||||||| Sbjct 18841 ATGACAGATGGCAAGGTGCTTACTAAAGATCAGCGTGGACAACTGGAAGAAAACTTCAAG 18782 Query 2800 GAGATCGCCGGCGGCCCGGTaaaaaaaCGCCTCTGGATTCTGGAAGCGGGTTTTTCTACA 2859 ||||||||||||||||| || ||||| ||||| |||||||||||| || ||| | || Sbjct 18781 GAGATCGCCGGCGGCCCAGTTAAAAAGCGCCTTTGGATTCTGGAAAGTGGATTTACCACT 18722 Query 2860 TCGGCAATTGGCGTAACTCCGCAGGATGCCGAAATGATGGCGTCCCGAAAATTTCAGGTA 2919 ||| || || || |||| |||| | ||||| | | | || || ||||||||| Sbjct 18721 CAGGCTATAGGGATATCTCCAGCGGATTCTCAAATGCTTGAAGCGCGTAAGTTTCAGGTA 18662 Query 2920 AGTGAACTGGCGCGATTCTTTGGCGTACCGCCTCACCTTGTCGGCGACGTCGAGAAATCA 2979 ||||||||||| || | ||| || ||||||||||| || || || ||||||||| || Sbjct 18661 GCCGAACTGGCGCGCTTTTATGGTGTCCCGCCTCACCTGGTAGGGGATGTCGAGAAAACA 18602 Query 2980 ACGAGCTGGGGATCGGGCATCGAGCAGCAGAATCTCGGCTTCCTGCAGTACACGCTGCAG 3039 || ||||| || || || || || || ||||| |||||||||||||| | | Sbjct 18601 ACTTCATGGGGTAGCGGTATTGAACAACAAAACCTCGGATTCCTGCAGTACACCTTAAAA 18542 Query 3040 CCCTATATCTCCCGGTGGGAAAACAGTATTCAGCGATGGCTGATCCCATCGAAAGA---C 3096 || ||| | || |||||| |||||||| |||| ||| || | ||||| | Sbjct 18541 CCTTATCTTGATCGCTGGGAATACAGTATTGAGCGCTGGTTGGT------AAAAGATGCC 18488 Query 3097 GTT---GGCCGCCTACATGCTGAGCACAATCTTGATGGTCTCCTGAGGGGCGATTCTGCC 3153 | | ||| | | ||||||||||| ||| | || ||||| ||| | || ||||| | Sbjct 18487 GATCAGGGCAGGATTCATGCTGAGCATAATTTAGACGGTCTACTGCGCGGTGATTCGACA 18428 Query 3154 TCCCGTGCCGCGTTCATGAAGGCAATGGGAGAGTCCGGCCTGCGTACCATCAACGAAATG 3213 ||| ||| | |||||| | |||||| | | || | || ||| |||||||| | Sbjct 18427 AGCCGCGCCTCTTTCATGCAAACAATGGTGAATACTGGTATTCGCACCGTCAACGAAGTC 18368 Query 3214 CGCCGAACAGACAACATGCCGCCATTACCGGGTGGCGATGTAGCGATGCGACAGGCGCAG 3273 | ||| || ||| |||| || | || || || |||||||||| || ||| ||||| Sbjct 18367 AGGCGACTGGATAACTTGCCACCGCTTCCCGGCGGAGATGTAGCGACACGCCAGTCGCAG 18308 Query 3274 TATGTGCCAATTACCGACTTAGGAACCAACAAAGAGCCCCGAAATAACGGGGCTTAATTT 3333 | || || |||||||| | |||| | |||||||||||| | | |||||||||||||| Sbjct 18307 AACGTACCCATTACCGATCTCGGAAGAACCAAAGAGCCCCGCACTGACGGGGCTTAATTT 18248 Query 3334 TTATGGGGGCCGTGATGCCTGAAATCGTAAAAACGCTGTCCTTCGACGAGACAGAAATCA 3393 ||||||||||| |||||||||| || ||||| ||| | |||||| |||||||||| | Sbjct 18247 TTATGGGGGCCATGATGCCTGATATTCAGAAAACCCTGGCGTTCGACCAGACAGAAATAA 18188 Query 3394 AATTCACCGGTGACGGGAAGCAGGGGATTTTCGAAGGATATGCCTCTGTTTTTAATAACA 3453 | || ||||| ||||| | | || | ||| || || || ||||| ||||| || || | Sbjct 18187 AGTTTACCGGCGACGGTGATAAAGGCACTTTTGAGGGCTACGCCTCAGTTTTCAACAATA 18128 Query 3454 CCGATTCCGATGGCGACATCATTCTGCCCGGGGCGTTTAAAAACGCGCTGGCGAACCAGA 3513 | || ||||| || ||||| || ||||| || || || | | | || || | Sbjct 18127 CGGACTCCGACGGAGACATTATCCTGCCAGGTGCATTCAGCGGTGTTATTGCTGGTCAAA 18068 Query 3514 CCCGAAAAGTGGCGATGTTTTTCAACCACAAGACGTGGGAGCTGCCGGTTGGTAAATGGG 3573 |||||| || || ||||| || ||||| ||||| | | | | || ||||||||||||| Sbjct 18067 GCCGAAAGGTCGCCATGTTCTTTAACCATCAGACGCGCGCGATCCCTGTTGGTAAATGGG 18008 Query 3574 ACAGTCTGGCCGAAGACGAAAAAGGGCTCTACGTTCGCGGTCAACTTACCCCAGGACACA 3633 | || || ||||| |||||||| | |||||||||||||| || ||||||| | Sbjct 18007 ATTCCATGCATGAGGACGATAAAGGGCTGTTTGTTCGCGGTCAACTCACGCCAGGACTTA 17948 Query 3634 GCGGCGCCGCCGACCTGAAAGCAGCAATGCAGCACGGCACGGTTGAGGGTATGTCGGTTG 3693 | | | ||||||||||| |||||| | |||||||| ||||| |||||||| || | Sbjct 17947 GTCTGTCTGAGGACCTGAAAGCGGCAATGAAACACGGCACCGTTGAAGGTATGTCAGTCG 17888 Query 3694 GCTTTTCCGTTGCGAAAGACGATTACACCATCATTCCCACAGGCCGGATTTTTAAGAATA 3753 | || ||||| | || ||||| || || | | |||| ||||| || || | Sbjct 17887 GTTTCTCCGTCGGCCCCGATGATTATACAGTCGGCACTTCCGGCCTCATTTTCAAAAACA 17828 Query 3754 TCCAGGCTCTGCGCGAAATCAGCGTCTGCACTTTCCCCGCCAACGAACAGGCTGGCATCG 3813 | |||||| |||||||| |||||||||||||| |||||||| | ||||||| | Sbjct 17827 TTTCTTATCTGCGGGAAATCAGTGTCTGCACTTTCCCGGCCAACGAGCTGGCTGGCGTGA 17768 Query 3814 CAGCCATGAAAAGTGTCGATGGCATTGAAACGATCCGTGATGTGGAGAACTGGCTGAGGG 3873 | |||||||||||| |||| ||||| |||| || ||||| | ||| ||||||||||| Sbjct 17767 CCGCCATGAAAAGTATCGACGGCATCAAAACCATTCGTGACGCGGAAGCCTGGCTGAGGG 17708 Query 3874 ATTCAGTCGG------CCTCACCAAATCACAGGCAGTTGGGCTAATAGCCCGGTTTAAGT 3927 |||||||||| || | | || | |||||| || || ||||| |||||| Sbjct 17707 ATTCAGTCGGTTTGACCCGCTCTGAAGCGCAGGCATTT------ATTGCCCGCGTTAAGT 17654 Query 3928 CAGCGATTCGGAGCGAGTCCGAGGGCGACGGAAACGAAGCACAAATAAACGCTCTGCTTC 3987 | || ||||||||||||| ||| || | || |||| ||| | Sbjct 17653 CCGCAGGCCGGAGCGAGTCCGGTAGCGGCG------------ACATTGACGCGCTGGCAC 17606 Query 3988 AGAGCATCAAATCTTTCCCTTCTAA-CTTAGG--TAAATAA---------TTATGTCTGA 4035 || |||| || || || | |||| || || | |||| ||||||||| Sbjct 17605 AGCGCATAAACTCATTTGCCGCTAATCTGCGGAATGCATAACGGAGCACCATATGTCTGA 17546 Query 4036 ACTCG-CTCTCATTCAAAAAGCTATCGAAGAATCCCAGCAGAAAATGACCCAGCTTTTCG 4094 | | | | ||| | ||||||| || || | ||||| | || | | | || ||| Sbjct 17545 ATTAGCCACTC-TCGAAAAAGCGATTGAGAATTCCCAAAAAGAAGTTAAGGAACTCATCG 17487 Query 4095 ATGCGCAGAA-AGCAGAAATCGA--AAGCACA--GGCCAGGTTTCCAAACAGTTGCAGTC 4149 | |||| ||| ||||| | || || | ||| | || || | ||||| | Sbjct 17486 A-----AGAACAGCGTAAATCCATCAATCAGAACGGCGAAATTAACACGAAACTGCAGGC 17432 Query 4150 CGACCTGATGAAAGTACAGGAAGAGCTGACCAAATCCGGCACTCGCCTCTTCGATCTGGA 4209 ||| |||| |||| ||||||||||||| | ||||||||||||| |||||||| || Sbjct 17431 CGATCTGACCAAAGCTCAGGAAGAGCTGAAGACCACCGGCACTCGCCTGTTCGATCTTGA 17372 Query 4210 ACAGAAACTGGCATCCGGCGCTGAGAATCCTGGTGAGAAGAAATCCTTCTCTGAACGGGC 4269 || ||||| || | | | ||| || | | || || || | || || | Sbjct 17371 GCAAAAACTTGCTGGTAACTCACCGGATCAGACTGCGCAAAAGTCATTTGCCGAGCGCGT 17312 Query 4270 TGCTGAAGAGCTTATTAAGTCATGGGACGGTAAACAGGGCACCTTTG---GCGCTAAAAC 4326 | ||||| || || || ||||| || | ||||| | | || | Sbjct 17311 GTCCGAAGACCTGATGAAAGGCTGGGATGGCTCCC---GCACCAAAGCGAAAGTTACCAG 17255 Query 4327 GTTTAACAAGTCACTAGGCAGTGACGCTGATTCGGCTGGCTCACTGATCCAGCCTATGCA 4386 ||| | || | | || | ||| | || || || | ||| ||||||| ||| Sbjct 17254 CTTTGATAAAGCGATCGGTTCCGGCGCAGCGTCAGCGGGTGCCCTGGTCCAGCCGCAGCA 17195 Query 4387 GATCCCAGGCATCATCATGCCAGGCCTGCGCCGTCTTACCATTCGTGATCTGCTGGCTCA 4446 || ||||| || | |||||||| ||||| ||||| ||| ||||||| || ||||| || Sbjct 17194 AATGCCAGGTATTCTGATGCCAGGGCTGCGTCGTCTGACCGTTCGTGACCTTCTGGCACA 17135 Query 4447 GGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTGAAGAGGTGTTTACCAATAACGC 4506 ||||| | | |||||||||| |||||||| |||||||| | ||||| ||| ||||| Sbjct 17134 AGGCCGTATTACCAGTAACGCGCTGGAATACGTGCGTGAGAATGTGTTCACC---AACGC 17078 Query 4507 CGACGTG---GTGGCAGAGAAAGCA--CTGAAGCCAGAATCGGATATCACCTTCAGCAAA 4561 | | | ||||| ||| ||| || ||||| ||| | |||||||||| |||| Sbjct 17077 TGCTGCGCCAGTGGC--GGAAGGCACCCTCAAGCCTGAAAGTAACATCACCTTCACCAAA 17020 Query 4562 CAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGCATCACGTCAGGTGATGGAT 4621 |||| ||||||||||| |||||||| |||||| | ||||| || || ||| | ||||| Sbjct 17019 GAAACGGCGAACGTGAAAACCATCGCCCACTGGATCCAGGCGTCGCGACAGATCATGGAC 16960 Query 4622 GATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCATGTACGGCCTGGCACTGAAG 4681 ||||| || ||| ||||||||||| ||| |||| | ||||| || ||||| ||| | Sbjct 16959 GATGCTCCGGCGCTGCAGTCCTACATCAACTCCCGCATGATGTATGGGCTGGCGCTGGTG 16900 Query 4682 GAAGAGGGCCAGCTGCTGAACGGCGACGGTACCGGGGATAACCTGGAAGGGCTGAACAAA 4741 ||||| ||| |||| ||||| || || || || ||||| ||| | || | ||| | Sbjct 16899 GAAGAAAATCAGATGCTAAACGGTGATGGGACTGGCGATAATCTGCAGGGCATTAACGTA 16840 Query 4742 GTGGCAACCGCCTATGACACCTCGCTGAATGCCACCGGCGACACCCGCGCTGACATTATC 4801 || || | || |||||| ||| |||| ||||| ||||| || || | |||||||| || Sbjct 16839 GTCGCGAACGACTATGAAACCGCGCTCAATGCTACCGGTGATACTGGTGCTGACATCCTC 16780 Query 4802 GCTCACGCTATTTATCAGGTG------ACCGAGTCTGAGTTCAGCGCTTCCGGTATCGTC 4855 ||||| || || ||||||||| | ||| | ||| |||| ||| || || Sbjct 16779 GCTCATGCGATCTATCAGGTGTCTCTCAGCGAATTTGA----AGCG--GACGGCATTATC 16726 Query 4856 CTGAACCCGCGCGACTGGCACAACATCGCGTTGCTGAAAGACAATGAAGGCCGCTATATC 4915 || |||||| ||||||||| || || | |||| || | | ||| || ||| Sbjct 16725 CTTAACCCGGCAGACTGGCACCGGATTGCTCTATTGAAGGATGCTAACGGCAATTACATC 16666 Query 4916 TTCGGTGGTCCTCAGGCATTCACCAGTAACATCATGTGGGGCTTGCCAGTGGTTCCGACT 4975 | || || || ||||| || || || | ||||||| | || || ||| | || Sbjct 16665 CTTGGCGGGCCGCAGGCGTTTGCCTCCAAGGTGCTGTGGGGGCTTCCGGTTGTTTCTACC 16606 Query 4976 AAGGCGCAGGCCGCCGGCACCTTTACCGTAGGCGGTTTCGATATGGCCTCACAGGTCTGG 5035 | ||| || || | || ||||| || || || | || | | | || || ||||| ||| Sbjct 16605 ACGGCCCAAGCATCAGGTACCTTCACTGTTGGAGCGTTTGGTCTTGCGTCTCAGGTATGG 16546 Query 5036 GATCGCATGGATGCCACCGTGGAAGTTAGCCGTGAAGACCGCGATAACTTCGTGAAAAAC 5095 ||||| ||||||||||| | || | ||| | | || || || |||||||| |||||| Sbjct 16545 GATCGTATGGATGCCACTATCGAGATCAGCAATCAGGATCGAGACAACTTCGTTAAAAAC 16486 Query 5096 ATGCTGACCATCCTGTGCGAAGAGCGTCTGGCGCTGGCGCATTATCGCCC 5145 |||||||||||||||||||||||||| |||| |||| |||||||| || Sbjct 16485 ATGCTGACCATCCTGTGCGAAGAGCGCTTGGCATTGGCTCATTATCGTCC 16436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127018724480128