Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq477 156 2e-33 >seq477 Length=38297 Score = 156 bits (172), Expect = 2e-33 Identities = 287/419 (68%), Gaps = 4/419 (1%) Strand=Plus/Minus Query 10620 GATTCGCTTAAAGAAGCTGGCGCCTTCACTGGGGCTCCTATCGAGAAAGAGATCACCTGG 10679 || ||| | |||||| ||||||||| || || || | |||||||| ||||||||| Sbjct 13744 GAATCGTTGAAAGAACATGGCGCCTTTACCGGTCGCCCGGTAGAGAAAGAAATCACCTGG 13685 Query 10680 AAACAGGGCGATAAGGAACTGACTGCAACCGTGTACGTCCGGCCCTTGTCGTACAGCACA 10739 || |||||||| || |||||||| ||||| |||| || ||||| ||| ||| ||| Sbjct 13684 AAGCAGGGCGAGAAAGAACTGACGGCAACGGTGTTTGTACGGCCTTTGGGTTACTACACT 13625 Query 10740 GCTGTTTCTGACCTTCTGGCCATGAATGGCAAGGTGGATGGGGTAGCGGGTCGGATAGCC 10799 || || || |||| || | ||| || || ||||| || || ||||| || || Sbjct 13624 GCGCGATCAGATATTCTCGCGGTAGGTGGAAAAGTTGATGGCGTTGCTGGTCGCATCGCA 13565 Query 10800 GCGTCAATCGTGGATGAAGAGGGTAAGCCGGTATTCACGCCGGCAGATATCACCGGCGAG 10859 || || || ||||| | || |||| ||||| || || ||||||||||| || ||| Sbjct 13564 GCTTCTATTTGTGATGAGAATGGCCAGCCAGTATTTACCCCTGCAGATATCACTGGTGAG 13505 Query 10860 GCCGATCCCGGTCGCGGCGCGCTGGATGGAAACCTGACCATCGCCCTGCTCACCGTGATC 10919 || ||||| | ||| || ||||| ||||| | || | || |||| | || Sbjct 13504 GCGGATCCGGATCGTGGTGCGCTTGATGGTGCTTTAACAGTGGCTTTGCTGGTGGCCATT 13445 Query 10920 GCCGAGGTGAACAACCTGGGAAAGACG--ACCAGCTCAGCGAACTAGATGAGGTGTGGCA 10977 ||||| || ||||||||||||||| ||| |||||| | || || | ||| Sbjct 13444 CAAGAGGTCAATAACCTGGGAAAGACGGAGCCA--TCAGCGCAGACGACGAAGCCTGGTG 13387 Query 10978 TGAGCTGGTGATGTGCGGGATTGGCGGCAGAACCATCGCAGAAGCCAAGTCGCGTCTCA 11036 || | || || || ||||||||||| || | ||||| || || |||||||| Sbjct 13386 CGAATTAGTCCTGAATGGTATTGGCGGCAGGACAGTGGCAGAGGCTCAGGAGCGTCTCA 13328 Score = 149 bits (164), Expect = 2e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 13326 GCGAACGCACAAGCAACTGCCTTCCAGGCCCAGCTGGCGGCATTTGCGAGCACCGCTGCA 13385 || || || ||||| || || || || || || ||||| |||||||| || || || Sbjct 10505 GCTAATGCTCAAGCTACAGCGTTACAAGCACAACTGGCAGCATTTGCATCTACGGCAGCT 10446 Query 13386 ATCCCAATCGTAGGCCCGCTGTTGGCCCCGGCGGCGGCTGCTTCGGCTGCCGGCATCACC 13445 || || ||||| |||||| ||||| ||||| ||| || | ||||| | || Sbjct 10445 ATACCTATCGTCGGCCCGGCATTGGCTCCGGCCGCGATGGCAACTGCTGCTACTGTAACG 10386 Query 13446 GCTCCAATGGTTGCCGGAGTTGCTGCGTCCGCCCTTGCTGGCATGGCTCACGATGGGATT 13505 || ||||| |||| | || |||| | | ||| |||| ||||| || ||||| ||| Sbjct 10385 ATGCCTATGGTGGCCGCAATTTCTGCAGCTGGTCTTTCTGGTATGGCCCATGATGGTATT 10326 Query 13506 GATGCTGTTCCGGAGACCGGCACCTGGTTACTCCAGAAGGGCGAGAGGGTGACGACGGCA 13565 ||||||||||| || || || |||||||| || || |||||||||||||| ||||| || Sbjct 10325 GATGCTGTTCCTGAAACGGGTACCTGGTTGCTTCAAAAGGGCGAGAGGGTAACGACTGCT 10266 Query 13566 GAGACGAGCGCAAAGCTCGA 13585 | ||| |||||||| || || Sbjct 10265 GGGACAAGCGCAAAACTGGA 10246 Score = 134 bits (148), Expect = 5e-27 Identities = 257/372 (69%), Gaps = 29/372 (8%) Strand=Plus/Minus Query 9295 GACGACCCAGGAACCGGCAGGAGCATTTCCGACAATATCGCGTTGCGCTGGAACGGTCGT 9354 || || || | ||| ||| | |||||| |||| |||||||| |||| ||||| |||||| Sbjct 15062 GATGATCCGGAAACAGGCCGCAGCATTGCCGATAATATCGCTGTGCGTTGGAATGGTCGT 15003 Query 9355 CTGTTCAAACGCACGGGCGACTTAGGGTTCAGAATTGGCGTTCTGCATGGTGCCGTTCTT 9414 ||| ||||||| || || ||| || || || || || |||||||| || || || Sbjct 15002 GAGTTTAAACGCAACGGAAACCTAGCCTTTAGGATCGGTGTGCTGCATGGAGCTGTGCTG 14943 Query 9415 CCCAAGAAAGGGGAGCGCTCGGACAAGACTGCGAATGCCCCGACGCCGCACTGGAGACTT 9474 |||||| | | | || || | ||||||||| || ||||||||| |||| Sbjct 14942 ----AGAAAGC--ATCCC---GATAAAGCCAAGAATGCCCCAACTCCGCACTGGCGACTA 14892 Query 9475 CTTGAGTTCGGGACAGAAGACATGCGGGCTCAGCCTTTCATGCGAAGCGCTCTGGCAGAC 9534 | || || || || ||| | ||||||||||| |||||||||||| || |||||| Sbjct 14891 TTGGAATTTGGTACCGAAAATATGCGGGCTCAACCTTTCATGCGACCGGC---GGCAGAG 14835 Query 9535 AACATCGCAG--AAGTCA-CAAGCACTTTCGTATCTGAATACGAGAAAGGCATCGATAGG 9591 | || ||| | || || | | || ||||| |||||| | |||| ||||| ||| Sbjct 14834 AGCAGCGCCGCTGAGGCATCCAATACGTTCGTTGTTGAATATGGAAAAGCTATCGACAGG 14775 Query 9592 GCCAT--CAAGCGCGCAGCCAAGAAGGCTGCTCAGGGG--TGAGTATGTACCCGCCAATC 9647 || || ||| | ||||||||||| ||||| || ||| | | ||||| Sbjct 14774 GCAATAGCAA--GAGCAGCCAAGAA--------AGGGGAAAGATGATGATCGCACCAATT 14725 Query 9648 TTTAAGGTCTGT 9659 |||||||||||| Sbjct 14724 TTTAAGGTCTGT 14713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180438651584256