Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 2e-14 seq15 91.5 2e-13 >seq7 Length=43258566 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||| ||||| || || ||||| || | ||| || ||||| || || || || Sbjct 8774960 GTGCCACCCCTAAGCCTCAAGACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCC 8774901 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||| | ||| |||| |||||| ||||| || |||| || || |||||||| Sbjct 8774900 GCAAGGGTTCTACCATCTTCTAGTTGTTTACCAGCGAATATCAGCCTCTGTTGATCCGGC 8774841 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || ||||||||||| || || Sbjct 8774840 GGTATTCCTTCTTTGTCCTG 8774821 >seq15 Length=39600445 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || ||||| ||||| || || ||||| || | ||| || ||||| || || || || Sbjct 564865 GTGCCACCCCTAAGCCTCAAGACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAGTCC 564806 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| ||||| | || |||| ||| || ||||| || |||| || ||||||||||| Sbjct 564805 GCAAGGGTTCTACCGTCTTCTAGTTGCTTCCCAGCGAAGATCAGCCTCTGCTGATCCGGC 564746 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || ||||||||||| || || Sbjct 564745 GGTATTCCTTCTTTGTCCTG 564726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743513611345920