Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_002656.1 Length=50550 Score E Sequences producing significant alignments: (Bits) Value seq8 695 0.0 seq18 114 4e-21 seq9 114 4e-21 >seq8 Length=24646021 Score = 695 bits (770), Expect = 0.0 Identities = 700/903 (78%), Gaps = 35/903 (4%) Strand=Plus/Minus Query 11672 GATCATTCCCAGATCGCACAGACCAAAGACACGATGTTCACCGGGTACCTCGACCCCGTG 11731 ||||| | |||||||| |||||| || || ||||||| || ||||| || |||| | Sbjct 19507293 GATCACGCTCAGATCGCCCAGACCGGCGATACCATGTTCAAGGGCTACCTGGAGCCCGAG 19507234 Query 11732 CAGGCGAAGGACTACTTCGCCGAGGCCGAGAAGACCTCGATCGTTCAGCGTGTCGCCCAG 11791 ||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 19507233 CAGGCGAAGGATTACTTCGCCGAGGCCGAGAAGACCTCGATCGTCCAGCAGTTCGCCCAG 19507174 Query 11792 AAGATCCCGATGGGTGCCACCGGCATCGTCATCCCCCACTGGACCGGAGACGTCTCCGCT 11851 ||| | ||||||||| |||| ||| ||||| |||||| ||| ||||| || Sbjct 19507173 AAGGTGCCGATGGGTACCACGGGCCAGAAGATCCCGCACTGGGTCGGCGACGTGAGTGCC 19507114 Query 11852 CAGTGGATCGGTGAAGGCGACATGAAGCCCATCACCAAGGGCAACATGACCAAGCGCGAC 11911 |||||||||||||| || |||||||||||||||||||||||||||||||| || | Sbjct 19507113 CAGTGGATCGGTGAGGGTGACATGAAGCCCATCACCAAGGGCAACATGACTTCGCAGACC 19507054 Query 11912 GT-GCACCCCGCCAAGATCGCGACGATCTTCGTCGCCTCCGCGGAAACCGTCCGTGCGAA 11970 | || |||| | |||||||||||||||||||| || || ||||| ||||||||||| || Sbjct 19507053 ATCGCGCCCCAC-AAGATCGCGACGATCTTCGTGGCGTCTGCGGAGACCGTCCGTGCCAA 19506995 Query 11971 CCCGGCCAACTACCTGGGCACCATGCGGACCAAGGTCGCTACCGCGATCGCTATGGCGTT 12030 ||| |||||||||||||| |||||||| |||||||| || ||||| |||| |||||||| Sbjct 19506994 CCCCGCCAACTACCTGGGAACCATGCGTACCAAGGTGGCGACCGCCTTCGCGATGGCGTT 19506935 Query 12031 CGACAACGCCGCGCTGCACGGTACCAACGCCCCGTCCGCCTTCCAGGGTTACCTCGACCA 12090 |||| ||| ||| ||||||| ||| || ||||| | || || ||| ||| || Sbjct 19506934 CGACGGCGCGGCGATGCACGGCACCGACAGCCCGTTC-CCGACC-----TACATCGGTCA 19506881 Query 12091 GTCGAACAAGACGCAGTCGAT---------CA-----GCC-CGAACGCCTAC---CAGGG 12132 | | | |||| | ||||| || ||| ||| || ||| |||| Sbjct 19506880 GACCACCAAGGCCATCTCGATTGCTGACACCACCGGTGCCACGACCGTGTACGACCAGG- 19506822 Query 12133 CCTCGGCGTCAGCGGCTTGACCAAGCTGGTCACCGACGGCAAGAAGTGGACCCACACCCT 12192 | | ||| | |||| ||| | |||||| | ||||||||||||||||||||||||||| Sbjct 19506821 --TGGCCGTGAACGGCCTGAGCCTGCTGGTGAACGACGGCAAGAAGTGGACCCACACCCT 19506764 Query 12193 GCTCGACGACACCGTTGAGCCGGTTCTGAACGGATCGGTGGACGCCAACGGTCGCCCGCT 12252 || ||||||| | |||||| | |||||||| || |||| |||||||||||||| Sbjct 19506763 TCTGGACGACATCACCGAGCCGATCCTGAACGGCGCGAAGGACCAGAACGGTCGCCCGCT 19506704 Query 12253 GTTCGTGGAGTCGACCTACG---AGTCCCTCACCACCCCGTTCCGCGAGGGCCGTATCCT 12309 |||| | ||||||||||||| || || | | ||||||||| |||||| ||| | Sbjct 19506703 GTTCATCGAGTCGACCTACGGTGAGGCCG---CGAGCCCGTTCCGTTCGGGCCGGATCGT 19506647 Query 12310 CGGCCGCCCGACCATCCTCAGCGATCACGTCGCCGAGGGCGATGTCGTGGGCTACGCCGG 12369 || ||| ||||||||||||||||| ||||||| |||||| || |||| | || Sbjct 19506646 CGCCCGTCCGACCATCCTCAGCGACCACGTCGTGGAGGGCACCACGGTCGGCTTCATGGG 19506587 Query 12370 TGACTTCTCCCAGATCATCTGGGGCCAGGTCGGCGGCCTGTCCTTCGACGTCACCGACCA 12429 ||||||||||||| |||||||||||||| ||||||| |||||||||||||| || || || Sbjct 19506586 TGACTTCTCCCAGCTCATCTGGGGCCAGATCGGCGGTCTGTCCTTCGACGTGACGGATCA 19506527 Query 12430 GGCGACGCTGAACCTGGGCTCGCAAGAGTCCCCGAACTTCGTCTCGCTGTGGCAGCACAA 12489 |||||| |||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct 19506526 GGCGACCCTGAACCTGGGCACCGTCGAGAGCCCGAACTTCGTCTCGCTGTGGCAGCACAA 19506467 Query 12490 CCTCGTCGCCGTCCGTGTCGAGGCCGAGTACGGCCTGCTCATCAACGACGTGAACGCGTT 12549 ||||||||| |||||||||||||| ||||||| | | | |||||||| | ||||| Sbjct 19506466 CCTCGTCGCAGTCCGTGTCGAGGCTGAGTACGCGTTCCACTGCAACGACGCCGAGGCGTT 19506407 Query 12550 CGT 12552 ||| Sbjct 19506406 CGT 19506404 Score = 113 bits (124), Expect = 1e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 13075 TTTCGGGCCGAGGTGATCGACATCGAGGCCGAGGCCGTGCTTCGGCTGGTTCGGAATCAC 13134 || |||||||| ||||||||||||||||||| || ||||| || ||||| || || | Sbjct 19505985 TTCCGGGCCGATCTGATCGACATCGAGGCCGACGCGGTGCTGCGTCTGGTGCGTAACCCG 19505926 Query 13135 GAGGGCTACCTCTCGGAGACCGACGGCAACTACACGTACATGCTCCAGGC 13184 |||||||||||||||||||||||||| ||||| ||| ||||||||| Sbjct 19505925 GAGGGCTACCTCTCGGAGACCGACGGGGCGTACACCTACCAGCTCCAGGC 19505876 >seq18 Length=36757632 Score = 114 bits (126), Expect = 4e-21 Identities = 396/604 (66%), Gaps = 34/604 (6%) Strand=Plus/Plus Query 41717 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGG---------CTTACCGGTCTT- 41766 || |||||||| | |||||||||||| || | ||||| ||| || |||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 41767 --CGCCATCCAGTAATCGCCGG--TGCGG-GCCTCTACGCCGTAGATC-TCGTTGAGCGC 41820 | |||| |||| ||||||| | ||| ||||| || |||||| || ||| || ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCG-CGACCGC 22718252 Query 41821 CAGACCGTACACAGCCAGCTGGAAATCGTCACCAGGCTTAAGGCCAGTCTT-TAGATCTC 41879 || ||||||| | |||||||| |||||||| || | || ||||| ||| || | Sbjct 22718253 GAGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAG-TCCC 22718311 Query 41880 GTATGCGGATCTCATCGCCGAGCTTCAGCACCAGGTCGATGTACCCGCGGATCTCGATAC 41939 | | || | ||| || ||| | | || ||||||||| ||||| | | ||| | Sbjct 22718312 GGACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCC 22718371 Query 41940 CGTCTAGCTCGAACTCGATCGGGAGTTCCACTCCGGGGACCCCGTCAGGGGTGTGCCAGA 41999 |||| ||||||| ||||| || || | | || ||||| ||||| |||| Sbjct 22718372 CGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAG- 22718430 Query 42000 CACCGTCTGG--CGGTATCGAGTCGATCCAGTCGATCACCTTATCGACCTGTTCGAGTCC 42057 | | |||| ||| || || ||| ||| | ||| |||||||| || || || Sbjct 22718431 -ATCTCCTGGCCCGGAGTC---TCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCC 22718486 Query 42058 GATGTCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCA 42117 || | | || |||||||||||| |||||| |||| | || || |||||| Sbjct 22718487 GACGGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCA 22718546 Query 42118 GCCGAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--T 42173 ||| ||| |||||||||||||| || || | ||| |||||| | ||| Sbjct 22718547 CTCGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAAC 22718602 Query 42174 TGAAGATCTCATAGCACTCTTCTCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGT 42233 ||| || || | | ||| || |||||||||| |||| | | | | | | | Sbjct 22718603 GGAACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGA 22718662 Query 42234 ATTTCTCAGCCACCGCGTGAACCCCGGTACCCTGCTGCAGCCACGCCGCTGGGCGTCTCC 42293 |||||| || ||||| | | | || |||||| ||||||| |||||||| || || Sbjct 22718663 CCGCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCC 22718722 Query 42294 ACAC 42297 |||| Sbjct 22718723 ACAC 22718726 >seq9 Length=46179939 Score = 114 bits (126), Expect = 4e-21 Identities = 396/604 (66%), Gaps = 34/604 (6%) Strand=Plus/Minus Query 41717 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGG---------CTTACCGGTCTT- 41766 || |||||||| | |||||||||||| || | ||||| ||| || |||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 41767 --CGCCATCCAGTAATCGCCGG--TGCGG-GCCTCTACGCCGTAGATC-TCGTTGAGCGC 41820 | |||| |||| ||||||| | ||| ||||| || |||||| || ||| || ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCG-CGACCGC 16532092 Query 41821 CAGACCGTACACAGCCAGCTGGAAATCGTCACCAGGCTTAAGGCCAGTCTT-TAGATCTC 41879 || ||||||| | |||||||| |||||||| || | || ||||| ||| || | Sbjct 16532091 GAGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAG-TCCC 16532033 Query 41880 GTATGCGGATCTCATCGCCGAGCTTCAGCACCAGGTCGATGTACCCGCGGATCTCGATAC 41939 | | || | ||| || ||| | | || ||||||||| ||||| | | ||| | Sbjct 16532032 GGACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCC 16531973 Query 41940 CGTCTAGCTCGAACTCGATCGGGAGTTCCACTCCGGGGACCCCGTCAGGGGTGTGCCAGA 41999 |||| ||||||| ||||| || || | | || ||||| ||||| |||| Sbjct 16531972 CGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAG- 16531914 Query 42000 CACCGTCTGG--CGGTATCGAGTCGATCCAGTCGATCACCTTATCGACCTGTTCGAGTCC 42057 | | |||| ||| || || ||| ||| | ||| |||||||| || || || Sbjct 16531913 -ATCTCCTGGCCCGGAGTC---TCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCC 16531858 Query 42058 GATGTCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCA 42117 || | | || |||||||||||| |||||| |||| | || || |||||| Sbjct 16531857 GACGGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCA 16531798 Query 42118 GCCGAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--T 42173 ||| ||| |||||||||||||| || || | ||| |||||| | ||| Sbjct 16531797 CTCGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAAC 16531742 Query 42174 TGAAGATCTCATAGCACTCTTCTCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGT 42233 ||| || || | | ||| || |||||||||| |||| | | | | | | | Sbjct 16531741 GGAACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGA 16531682 Query 42234 ATTTCTCAGCCACCGCGTGAACCCCGGTACCCTGCTGCAGCCACGCCGCTGGGCGTCTCC 42293 |||||| || ||||| | | | || |||||| ||||||| |||||||| || || Sbjct 16531681 CCGCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCC 16531622 Query 42294 ACAC 42297 |||| Sbjct 16531621 ACAC 16531618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161635758828544