Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq431 237 2e-57 >seq431 Length=56731 Score = 237 bits (262), Expect = 2e-57 Identities = 204/245 (83%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 157882 TAATATTCGTGTAACCTGGCTGTCTCAGGTCTGGTGTCAGAGTTTTCAGGTCGCTCCTGA 157941 ||||| | |||| ||||||||| ||||||||| ||||||||||||||||||||| |||| Sbjct 2449 TAATAAT-GTGTGACCTGGCTGGCTCAGGTCTTGTGTCAGAGTTTTCAGGTCGCAACTGA 2391 Query 157942 TCAATTTCAGGGCCTCTGACATGACCTAACAACTG-TTTTTAGGCAGCCGGGACCGACGG 158000 |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| Sbjct 2390 TCAATTTCAGGGCCTCTGACGTGACCTAACGACTGCTTTTTAGGCAGCCGGGACCGACGC 2331 Query 158001 CTTAACGTGTCCATCCGAAACACGGGAAAGTGGCCTGAGAAAAAT-TCCTGGTCTCACCG 158059 |||||||||||||||||||||||||||| ||||| |||| |||| || || | ||| Sbjct 2330 CTTAACGTGTCCATCCGAAACACGGGAA--TGGCCCGAGATAAATATCTTGCCCGGGCCG 2273 Query 158060 GGGTTTGAACCCGGGACCTTTGGGTTGCCATGCCAGCGCTTAACCCACTCAGCTAC-GCC 158118 || ||||||||||| ||| || | | |||||| | | ||||||| |||| ||| Sbjct 2272 GGAATTGAACCCGGG-CCTCTGAATCATAAAGCCAGCATCTGATCCACTCAACTACGGCC 2214 Query 158119 ACCCC 158123 || || Sbjct 2213 ACTCC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679802707192320