Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 102 6e-17 seq17 93.3 3e-14 seq6 86.0 5e-12 seq3 86.0 5e-12 seq18 82.4 6e-11 seq15 82.4 6e-11 >seq1 Length=46747018 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||| ||||| | |||| |||| |||||| || |||||||| |||||||||||||| || Sbjct 20151639 CCTCCACGTAGACGTAAG-ACCAGGTGAAGCGTAGATTCTTTCTGAATGTTGTAGTCAGC 20151697 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||| ||||| || ||||| ||| |||| || || || || ||| || Sbjct 20151698 TAGAGTCCTTCCATCCTCCAACTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGG 20151757 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| || | |||||| | ||| ||||||| | ||| Sbjct 20151758 GATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCAC 20151817 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | || |||||||| || || ||||| || ||||| Sbjct 20151818 CTCCAAAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 20151865 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTC-TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||||| ||||| | |||| |||| |||||| || |||||||| |||||||||||||| || Sbjct 20187772 CCTCCACGTAGACGTAAG-ACCAGGTGAAGCGTAGATTCTTTCTGAATGTTGTAGTCAGC 20187830 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||| ||||| || ||||| ||| |||| || || || || ||| || Sbjct 20187831 TAGAGTCCTTCCATCCTCCAACTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGG 20187890 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || |||||||| || | |||||| | ||| ||||||| | ||| Sbjct 20187891 GATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCAC 20187950 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | || |||||||| || || ||||| || ||||| Sbjct 20187951 CTCCAAAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 20187998 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| | | |||| ||| || || || || ||||| ||||||||||||||| Sbjct 20152095 CCTCCACGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCC 20152154 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| | || || || || |||| || || || |||||| || Sbjct 20152155 AAAGTTCTGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGA 20152214 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| | | |||| | | || | | |||||| | || Sbjct 20152215 ATGCCTTCCTTGTCCTGAATCT-TGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCAC 20152273 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || ||||| | ||||| ||||| || ||||| Sbjct 20152274 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 20152321 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| | | |||| ||| || || || || ||||| ||||||||||||||| Sbjct 20188228 CCTCCACGTAGACGCAAGACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCC 20188287 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||||| | || || || || |||| || || || |||||| || Sbjct 20188288 AAAGTTCTGCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGA 20188347 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| | | |||| | | || | | |||||| | || Sbjct 20188348 ATGCCTTCCTTGTCCTGAATCT-TGGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCAC 20188406 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || ||||| | ||||| ||||| || ||||| Sbjct 20188407 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 20188454 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || || || || || |||||||| |||||| Sbjct 20151183 CCACCACGGAGACGAAGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCC 20151242 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | || || || || |||| || | || |||||| || Sbjct 20151243 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGG 20151302 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || ||| | |||||| | ||| ||||| | ||| Sbjct 20151303 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACC 20151362 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| | |||||||||||||| || || ||||| ||||| Sbjct 20151363 TCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCAT 20151409 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || || || || || |||||||| |||||| Sbjct 20187316 CCACCACGGAGACGAAGGACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCC 20187375 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | || || || || |||| || | || |||||| || Sbjct 20187376 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGG 20187435 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || ||| | |||||| | ||| ||||| | ||| Sbjct 20187436 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACC 20187495 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| | |||||||||||||| || || ||||| ||||| Sbjct 20187496 TCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCAT 20187542 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| || || || || ||||||||||| |||||| Sbjct 38964930 CCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCC 38964989 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | || | | |||||||||||| || || ||| ||||||| || || || || Sbjct 38964990 AAGGTCCTGCCATCTTCCAATTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTC 38965042 >seq17 Length=38882957 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| || || || || || ||||||||||| ||| Sbjct 3491847 CCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 3491906 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||||| || || || ||| ||||||| || || |||||| || Sbjct 3491907 AAGGTTCTCCCGTCTTCCAACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 3491966 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || || | |||||| | | || | | |||||| | || Sbjct 3491967 ATGCCTTCCTTGTCCTGGATCT-TTGCTTTAACGTTGTCGATGGTGTCAGAGCTTTCCAC 3492025 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || ||||| | ||||| || || || ||||| Sbjct 3492026 CTCGAGGGTGATGGTCTTCCCGGTGAGAGTTTTCACGAAGATCTGCAT 3492073 >seq6 Length=47127078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| ||||| | | |||| ||| || || || ||||| |||||||||||||| || Sbjct 30236127 CCTCCACGTAGACGCAAGACCAAGTGGAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCT 30236186 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| ||||| || ||||| ||| | || | || || || ||| || Sbjct 30236187 AGAGTTCTTCCATCCTCCAACTGCTTGCCGGCAAATATCAACCTCTGCTGGTCCGGTGGG 30236246 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | |||||| | ||| ||||||| | ||| Sbjct 30236247 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCACC 30236306 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | || || ||||| || || |||||||||||||| Sbjct 30236307 TCCAAAGTGATAGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCAT 30236353 >seq3 Length=51870232 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| |||||| || || || || || ||||||||||| ||| Sbjct 22921375 CCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 22921434 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||||| || ||||| || ||||||| || || |||||| || Sbjct 22921435 AAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGG 22921494 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| ||| | ||| || | | | ||||| | ||| Sbjct 22921495 ATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACC 22921554 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || ||||| | ||||| || || || ||||| Sbjct 22921555 TCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 22921601 >seq18 Length=36757632 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || || || |||| |||||| || || ||||| |||||||||||||| || Sbjct 8130994 CCACCCCTAAGCCTCAGAACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCT 8131053 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | ||| || ||| || | |||||| || ||| |||| || || |||||||| Sbjct 8131054 AGCGTTCGACCATCCTCAAGTTGTTTCCCAGCAAAGATGAGCCTCTGTTGATC 8131106 >seq15 Length=39600445 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || || || |||| |||||| || || ||||| |||||||||||||| || Sbjct 4923319 CCACCCCTAAGCCTCAGAACCAAGTGAAGAGTGGACTCTTTCTGAATGTTGTAGTCAGCT 4923378 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 | ||| || ||| || | |||||| || ||| |||| || || |||||||| Sbjct 4923379 AGCGTTCGACCATCCTCAAGTTGTTTCCCAGCAAAGATGAGCCTCTGTTGATC 4923431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379337638401120