Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1 132 1e-25 seq16 107 4e-18 seq3 93.3 8e-14 >seq1 Length=46747018 Score = 132 bits (146), Expect = 1e-25 Identities = 150/198 (76%), Gaps = 5/198 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| || ||| || |||| || ||| |||| ||||||||| || ||| | | Sbjct 3084120 AGAACAATCCTGACGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGACCTTAAGC 3084179 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||||||||||||| |||||| ||||| || || |||||||| | | Sbjct 3084180 TGATGGCACTTCCTCCATGCCACATGTTTGCTCAGTTTTACGTTGCCAATGGAGAGCTTT 3084239 Query 35637 CGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | || || |||||||||| ||| || ||| || | || || || || || ||||| Sbjct 3084240 CATGTCAAATGTATCAGCGCTCAGCTGATATG--GGTCTTGGTGTACCGTTTAACATTGC 3084297 Query 35695 ATCATACTCTCTTCTGAC 35712 |||||||| ||||| || Sbjct 3084298 CTCATACTCCCTTCTTAC 3084315 >seq16 Length=39632211 Score = 107 bits (118), Expect = 4e-18 Identities = 145/199 (73%), Gaps = 5/199 (3%) Strand=Plus/Minus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| | | || || | | || ||||| ||| ||||| | | Sbjct 38025257 AGAACAATCCTGATGATCGGCGTATCATATTATCTGCTTGGAACCCTTCTGATCTCAAGC 38025198 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| |||||||| ||||||||| ||| || || |||||||| | || || | | Sbjct 38025197 TGATGGCGCTTCCTCCGTGCCACATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCT 38025138 Query 35637 CGTGCCAGTTGTATCAGCGAA--GCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 |||||||| |||||||||| ||||| ||| || | || ||||| || || || || Sbjct 38025137 CGTGCCAGATGTATCAGCGTTCGGCGGATATG--GGCCTTGGTGTGCCGTTTAACATCGC 38025080 Query 35695 ATCATACTCTCTTCTGACT 35713 || ||||||||||| ||| Sbjct 38025079 TTCCTACTCTCTTCTTACT 38025061 >seq3 Length=51870232 Score = 93.3 bits (102), Expect = 8e-14 Identities = 142/199 (71%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 35518 AGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 |||| ||||| |||||| | | || || | | || ||||| ||| || || | | Sbjct 35473206 AGAACAATCCTGATGATCGGCGTATCATATTATCTGCTTGGAACCCTTCTGACCTCAAGC 35473265 Query 35577 TTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGT 35636 | ||||| || ||||| ||||||||| ||| || || |||||||| | || || | | Sbjct 35473266 TGATGGCGCTGCCTCCGTGCCACATGTTTGCACAGTTCTATGTGGCGGAAGGGGAGCTTT 35473325 Query 35637 CGTGCCAGTTGTATCAGCGA--AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | ||| || |||||||||| |||||| ||| || | | ||||| || || ||||| Sbjct 35473326 CATGCAAGATGTATCAGCGTTCAGCGGATATG--GGCCTTGATGTGCCGTTTAACATTGC 35473383 Query 35695 ATCATACTCTCTTCTGACT 35713 || ||||||||||| ||| Sbjct 35473384 TTCCTACTCTCTTCTTACT 35473402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989566553634080