Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11 132 6e-26 seq12 105 8e-18 seq8 91.5 2e-13 >seq11 Length=45114658 Score = 132 bits (146), Expect = 6e-26 Identities = 401/610 (66%), Gaps = 12/610 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || |||||||||||||||| || ||||||| | || || ||||| || || || | Sbjct 34047548 CAGGCGAAATCGCAGTGCAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAC 34047489 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| |||||||| || || || ||| ||||| |||||| Sbjct 34047488 CCAGGCATGAGCCCTCGCTTCTTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAG 34047429 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC-TCCATAACCGGCGCTGTCATGTAT 33760 || ||||| || ||| ||||| | | ||||| | | | | | | | | | || Sbjct 34047428 ATCCCTTCGACGCAAGCGAAGGCGACGATCCTCTCGGCGAAAGTCTGAGAT-CCGTCGAT 34047370 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 |||| | ||||| | ||||||||| || ||||| || || || || || || Sbjct 34047369 CCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAA 34047310 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 || | || | || || | || || | || || |||| || || || ||||| || Sbjct 34047309 AAGGTGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGCTGTACATCTC 34047250 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 || || || || ||||| || ||||| || |||||||| | ||||||| | || Sbjct 34047249 TGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACTTG 34047190 Query 33941 CACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 ||| || | ||| || || || | ||| || || ||||| || ||| || | Sbjct 34047189 CACGTC-GGACATGAACCGCGAGGCGAGATTCTCCAAAACGATTCCGTCTGAGGCGGCGA 34047131 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATC- 34057 | || || | || ||||| || || | || || | ||| || || | ||| || Sbjct 34047130 AGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCTCCCAGTCG 34047072 Query 34058 --ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 |||| |||| || | || |||||||| | ||||| || || || || ||||| Sbjct 34047071 CGATTG---TCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCCTTC 34047015 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || ||||| | |||||| | | |||||||| ||||| || ||||| | ||| || Sbjct 34047014 TTGTACATCTCCCAGATCTGCGGGTATTGGATCGGGAACATGCAGAATCTGTCTGGGGTT 34046955 Query 34176 GGTGCAAGGA 34185 || | |||| Sbjct 34046954 GGGGTGAGGA 34046945 >seq12 Length=46391361 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||| || | || |||||||| || ||||||||| | ||| | || || Sbjct 30920759 AGTTCCTGAATTGAAGAGAGTCGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 30920700 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 30920699 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 30920640 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||||||||| ||||| | ||| | | ||| || | ||| ||| | || | Sbjct 30920639 CATGTGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 30920580 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||| || ||||| |||| |||| ||| || || || ||||| || Sbjct 30920579 AGTTTTGAACCCAAAGTAGTCGTATTCAAAATCACGATCATAAATGAT 30920532 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | ||| | |||||| | ||| |||| | || |||||||| |||||| Sbjct 30921085 TCCTCCTTGGTCAACGTAGCGAGCGGTATCATTGAAAACACGCAGCATTGGAAGAATACC 30921026 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || || | |||| | ||||| || || || ||| Sbjct 30921025 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 30920966 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| || |||| || | ||||| ||| || || ||||| || Sbjct 30920965 AACACCGATACCCCCAGCTGATTTACTTATAACAGCGCACTCTTTCAAGGTATCATATAT 30920906 Query 63602 GCCTTCTATGCTATCATCGATCATG 63626 || || ||||||||||| ||||| Sbjct 30920905 TCCCTCGATGCTATCATCCTTCATG 30920881 >seq8 Length=24646021 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| | ||| || | || ||||| || || ||||||||| | | ||| | || || Sbjct 14311192 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATG 14311133 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 14311132 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 14311073 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||| ||||||||||| ||||| | ||| | | ||| || | ||| ||| | || | Sbjct 14311072 CATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 14311013 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 14311012 TGTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 14310965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806767137280