Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq12 100 4e-16 seq8 87.8 2e-12 >seq12 Length=46391361 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | ||| || | || |||||||| || ||||||||| | ||| | || || Sbjct 30920759 AGTTCCTGAATTGAAGAGAGTCGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 30920700 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 30920699 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 30920640 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||||||||||||||| ||||| | || | | ||| || | ||| ||| | || | Sbjct 30920639 CATGTGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 30920580 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 |||||| || ||||| |||| |||| ||| || || || ||||| || Sbjct 30920579 AGTTTTGAACCCAAAGTAGTCGTATTCAAAATCACGATCATAAATGAT 30920532 >seq8 Length=24646021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| | ||| || | || ||||| || || ||||||||| | | ||| | || || Sbjct 14311192 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATG 14311133 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 66574 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 14311132 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 14311073 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 ||| ||||||||||| ||||| | || | | ||| || | ||| ||| | || | Sbjct 14311072 CATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 14311013 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 14311012 TGTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 14310965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658161479427840