Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq16 116 3e-21 seq3 100 2e-16 seq1 100 2e-16 seq114 86.0 5e-12 seq2 86.0 5e-12 >seq16 Length=39632211 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 |||||||||| || | || || || | |||| |||||||||||||| || || ||| Sbjct 38025044 ACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGG 38025103 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 ||||| || || || | ||| |||| |||||| || |||||||| ||||| || ||| Sbjct 38025104 CCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAAC 38025163 Query 21120 TGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 || | |||| | ||| || ||||| || |||||| || ||| || | |||||||| || Sbjct 38025164 TG-CGCAAACATGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGC 38025222 Query 21179 GCACATAACGATGCGCCGATC 21199 | | | ||| |||||||| Sbjct 38025223 AGATAATATGATACGCCGATC 38025243 >seq3 Length=51870232 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 21000 ACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGG 21059 |||||||| | || | || || || | |||| || ||||||||||| || | ||| Sbjct 35473419 ACGTGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACATCAAGG 35473360 Query 21060 CCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAAC 21119 ||||| || || || | ||| |||| || ||| || |||||||| ||||| || ||| Sbjct 35473359 CCCATATCCGCTGAACGCTGATACATCTTGCATGAAAGCTCCCCTTCCGCCACATAGAAC 35473300 Query 21120 TGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 || || | ||| || ||||| || |||||| || |||||| | |||||||| || Sbjct 35473299 TGTGCAAACATGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCA 35473240 Query 21180 CACATAACGATGCGCCGATC 21199 | | | ||| |||||||| Sbjct 35473239 GATAATATGATACGCCGATC 35473220 >seq1 Length=46747018 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20999 GACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAG 21058 ||| ||||||| | | | || || |||| ||| ||| ||||||||||| || || || Sbjct 3084334 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 3084275 Query 21059 GCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAA 21118 ||||| || || || | ||| |||| || || || ||||| || || |||||||| Sbjct 3084274 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 3084215 Query 21119 CTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGC 21178 |||| || | ||| || ||||| || |||||| || ||||| | || ||||| || Sbjct 3084214 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 3084155 Query 21179 GCACATAACGATGCGCCGATCGT 21201 |||| | || || ||||||| Sbjct 3084154 CGACATTATAATCCGTCGATCGT 3084132 >seq114 Length=481428 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 21035 GGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGA 21094 ||| ||||||||||| || || || ||||| || || || | ||| |||| || || || Sbjct 455426 GGCAATGTTAAACGGTACACCAAGACCCATATCTGCTGAGCGCTGATACATTTGACACGA 455367 Query 21095 CAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 ||||| || || ||||||||||| || | ||| |||||||| || |||||| | Sbjct 455366 GAGCTCTCCGTTTGCAACGTAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAG 455307 Query 21155 CGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | ||||| | || ||||| || |||| | || || ||||| Sbjct 455306 CTTAAGGTCAGAAGGATTCCAAGCTGACATTATTATCCGGCGATC 455262 >seq2 Length=31488241 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 21035 GGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGA 21094 ||| ||||||||||| || || || ||||| || || || | ||| |||| || || || Sbjct 13040148 GGCAATGTTAAACGGTACACCAAGACCCATATCTGCTGAGCGCTGATACATTTGACACGA 13040089 Query 21095 CAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 ||||| || || ||||||||||| || | ||| |||||||| || |||||| | Sbjct 13040088 GAGCTCTCCGTTTGCAACGTAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAG 13040029 Query 21155 CGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | ||||| | || ||||| || |||| | || || ||||| Sbjct 13040028 CTTAAGGTCAGAAGGATTCCAAGCTGACATTATTATCCGGCGATC 13039984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427768826196480