Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq13 149 9e-31 seq11 138 2e-27 seq12 118 2e-21 seq8 96.9 5e-15 >seq13 Length=54295181 Score = 149 bits (164), Expect = 9e-31 Identities = 417/628 (66%), Gaps = 19/628 (3%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||| || ||||| |||||||| || || ||||||| || || |||||||| || Sbjct 40048137 ATCAGGCACGCGAAGTCGCAGTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAG 40048196 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGA 50072 || || || ||||| || || ||||| || ||||| || || || ||| | | || || Sbjct 40048197 GTAAGCCCCGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATCGA-GCAGAAGCTACCGGA 40048255 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA--CTG-GCGCT 50129 |||||||| ||||| || || || || || | ||||| | || ||| | | Sbjct 40048256 GAAGAAGATCCCTTCCACGCAAGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGATCC 40048315 Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 ||| |||||||| ||||| | ||||||||| || ||||| || ||||| || Sbjct 40048316 GTCG---ATCCACTTCATGGCCCATTGGGCCTTCTTCACGACGCAAGGGATGGTTTCAAT 40048372 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 || ||||||| || | || || | || || | || ||||| | ||| || || Sbjct 40048373 CGCGCGGAAGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTATCTAACAAGAGGCT 40048432 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||| ||||| || || || || || || ||||| || |||||||| | ||||| Sbjct 40048433 GTACATCTCCGAGTGGATATTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTC 40048492 Query 50310 GGTAATCTGCACTTCTGTACAA-AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 || | |||||| || | ||| || || || | ||| || || |||||||| Sbjct 40048493 GGAGACCTGCACGTCGG-ACATGAACCGGGTGGCGAGATTCTCGAGGACGATTCCGTCGG 40048551 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGT---TTT---TCGTTGGGTGTTA 50422 ||| || || || || | || ||||| || || || | | |||||| | ||| Sbjct 40048552 AGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCTCCGTCGTTGAG-GTTG 40048610 Query 50423 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 || | ||| || | | |||| || | || ||||| || | ||||| || || | Sbjct 40048611 --TTCTCCCAGTCGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGG 40048668 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 | || || || || ||||| | |||||| | | || ||||||||||| || |||| Sbjct 40048669 CTTCGGCTTTCTTGTACATCTCCCAGATCTGCGGGTAGTGGATTGGGAACATGCAGAATC 40048728 Query 50543 TATTTGGATTTGGTGCAAGGATCGGTTC 50570 | | ||| |||| | |||| ||| || Sbjct 40048729 TGTCTGGGGTTGGGGTTAGGAGCGGCTC 40048756 >seq11 Length=45114658 Score = 138 bits (152), Expect = 2e-27 Identities = 410/620 (66%), Gaps = 18/620 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||||||||||| || ||||||| | || | |||||||| || || | Sbjct 34047548 CAGGCGAAATCGCAGTGCAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAC 34047489 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| || || ||||| |||||||| || || || ||| || || || ||||| Sbjct 34047488 CCAGGCATGAGCCCTCGCTTCTTAAGCCAGAAGATCGA-GCAGAAGCTACCGGAGAAGAA 34047430 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA--CTG-GCGCTGTCATG 50135 ||| ||||| || || ||||| || | ||||| | || ||| | | ||| Sbjct 34047429 GATCCCTTCGACGCAAGCGAAGGCGACGATCCTCTCGGCGAAAGTCTGAGATCCGTC--- 34047373 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 |||||| | ||||| | ||||||||| || ||||| || || || || || Sbjct 34047372 GATCCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCG 34047313 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 || || | || | || || | || || | || || |||| || || || ||||| Sbjct 34047312 GAAAAGGTGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGCTGTACAT 34047253 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || || || || ||||| || ||||| || |||||||| | ||||||| | Sbjct 34047252 CTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGAC 34047193 Query 50316 CTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 ||||| || | ||| || || || | ||| || || |||||||| ||| | Sbjct 34047192 TTGCACGTC-GGACATGAACCGCGAGGCGAGATTCTCCAAAACGATTCCGTCTGAGGCGG 34047134 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTCCAA 50433 | || || || | || ||||| || || || || | | ||| || || | ||| Sbjct 34047133 CGAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCTCCCAG 34047075 Query 50434 TC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || |||| |||| || | || |||||||| | ||||| || || || || ||| Sbjct 34047074 TCGCGATTG---TCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCC 34047018 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || || ||||| | |||||| | | |||||||| ||||| || ||||| | ||| Sbjct 34047017 TTCTTGTACATCTCCCAGATCTGCGGGTATTGGATCGGGAACATGCAGAATCTGTCTGGG 34046958 Query 50551 TTTGGTGCAAGGATCGGTTC 50570 |||| | |||| ||| || Sbjct 34046957 GTTGGGGTGAGGAGCGGCTC 34046938 >seq12 Length=46391361 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | ||| | |||||| | ||| |||| | || |||||||| |||||| Sbjct 30921085 TCCTCCTTGGTCAACGTAGCGAGCGGTATCATTGAAAACACGCAGCATTGGAAGAATACC 30921026 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || |||||| | ||||| || || || ||| Sbjct 30921025 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 30920966 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || |||| || | ||||| ||| || |||||||| || Sbjct 30920965 AACACCGATACCCCCAGCTGATTTACTTATAACAGCGCACTCTTTCAAGGTATCATATAT 30920906 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 ||||| ||||||||||| ||||| Sbjct 30920905 TCCCTCGATGCTATCATCCTTCATG 30920881 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||| || | || |||||||| || ||||||||| | ||||| || || Sbjct 30920759 AGTTCCTGAATTGAAGAGAGTCGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 30920700 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 30920699 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 30920640 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||||||||| ||||| | || || | ||| || | ||| ||| | || | Sbjct 30920639 CATGTGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 30920580 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||| || ||||| |||| |||| ||| || || || ||||| || Sbjct 30920579 AGTTTTGAACCCAAAGTAGTCGTATTCAAAATCACGATCATAAATGAT 30920532 >seq8 Length=24646021 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| | ||| || | || ||||| || || ||||||||| | | ||||| || || Sbjct 14311192 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATG 14311133 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 14311132 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 14311073 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||| ||||||||||| ||||| | || || | ||| || | ||| ||| | || | Sbjct 14311072 CATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 14311013 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 14311012 TGTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 14310965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718256445776640