Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq8 113 3e-20 seq5 113 3e-20 seq15 105 5e-18 seq9 104 2e-17 seq362 96.9 3e-15 seq14 89.7 4e-13 seq6 86.0 5e-12 seq1 86.0 5e-12 >seq8 Length=24646021 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | |||||||| |||| ||| |||||| || | ||||| || | | Sbjct 9097986 CCTCCACGCAGACGCAACACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 9097927 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | || ||||||||||| ||||| ||||| || || | || Sbjct 9097926 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGA 9097867 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | ||||| || | | ||||| | |||||| Sbjct 9097866 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCTGAACTCTCGACC 9097807 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || ||||| || || || || ||||| || ||||| Sbjct 9097806 TCTAGAGTGATGGTCTTTCCCGTCAGTGTCTTGACAAAGATCTGCAT 9097760 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | ||||| || |||| ||| |||||| || | ||||| |||| Sbjct 9383486 CCTCCACGCAGACGCAACACTAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCA 9383427 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || ||||||||||| || | ||||| || || | || Sbjct 9383426 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGG 9383367 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| ||| || || ||| |||||| | |||||| Sbjct 9383366 ATCCCTTCCTTGTCTTGGATCTTGGTTTTCACATTGTCAATAGTGTCGGAACTCTCGACC 9383307 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || ||||| || || || || ||||| || ||||| Sbjct 9383306 TCTAGAGTGATCGTCTTTCCCGTCAGTGTCTTGACAAAGATCTGCAT 9383260 >seq5 Length=35747119 Score = 113 bits (124), Expect = 3e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | |||||| | ||| | ||| |||||| || | ||||| |||| Sbjct 18747025 GCCTCCACGCAGACGTAACACGAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGC 18747084 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||||||||| | || ||||| || ||||||||||| ||||| ||||| || |||| ||| Sbjct 18747085 CAATGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGCGG 18747144 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059 | || || || || ||| ||| | ||||| | | | |||||| ||| ||| Sbjct 18747145 GATTCCCTCCTTGTC-CTGTATCTTAGCCTTGACGTTATCGATGGTGTCG-GAGCTCTCC 18747202 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || || ||||| |||| || || ||||| || ||||| Sbjct 18747203 ACCTCGAGTGTGATCGTCTTTCCCGTTAAGGTCTTGACAAAGATCTGCAT 18747252 >seq15 Length=39600445 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||||| | ||| | | |||| |||| || || ||||| || Sbjct 22431460 CTCCTTCTGGATGTTGTAATCGGCGAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAA 22431519 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||| |||||| ||||| | ||| | ||||| || || |||| | || || | Sbjct 22431520 GATCAGTCGCTGCTGATCCGGCGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 22431579 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| | ||||| |||| ||||| || || || ||||| |||||||| Sbjct 22431580 GTCGATCGTGTCGGATGATTCGACCTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 22431639 Query 43098 AAAAATTTGCATTTTCTT 43115 ||| || ||||||||||| Sbjct 22431640 AAAGATCTGCATTTTCTT 22431657 >seq9 Length=46179939 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | ||||||||||| | ||| |||||| || | ||||| || | | Sbjct 17421924 CCACCACGCAGACGCAACACCAAATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAGCC 17421983 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | || ||||||||||| ||||| | ||| || |||| || Sbjct 17421984 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGA 17422043 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| || ||| |||||| | ||| || Sbjct 17422044 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCGGAACTCTCCACC 17422103 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || ||||| || || || ||||| || ||||| Sbjct 17422104 TCTAGAGTAATGGTCTTGCCGGTAAGGGTCTTGACAAAGATCTGCAT 17422150 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | |||||||| |||| |||| |||||| || | ||||||||| | Sbjct 17422152 CCTCCACGTAGACGCAACACCAAGTGGAGAGTGGACTCCTTCTGGATATTGTAATCAGCG 17422211 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| || | || ||||||||||| ||||| ||||| || |||| || Sbjct 17422212 AGGGTTCTGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGAGGA 17422271 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||| || || || |||| |||| || || | | |||||| ||| ||| || Sbjct 17422272 ATACCCTCCTTGTCTTGGATCTTAGCTTTAACGTTGTCGATGGTGTCG-GAGCTCTCCAC 17422330 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || ||||| || || || || ||||| Sbjct 17422331 CTCGAGTGTGATCGTCTTTCCAGTAAGAGTCTTAACGAAGATCTGCAT 17422378 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | |||||||| || | || ||||||||| | ||||| || | | Sbjct 43442087 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGGATGTTGTAGTCCGCC 43442146 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | |||| || | ||| || |||||||| ||||| | ||| || |||| || Sbjct 43442147 AATGTTCTGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGA 43442206 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| || ||| ||||| | ||| || Sbjct 43442207 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAACTCTCCACC 43442266 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || ||||| || || || ||||| || ||||| Sbjct 43442267 TCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 43442313 Score = 95.1 bits (104), Expect = 9e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||| | | ||| | | |||| |||| || || ||||| || Sbjct 28463212 CTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAA 28463271 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 |||| ||||| || || | ||| | |||||| || || |||| || | || || Sbjct 28463272 GATCAGACGCTGCTGGTCCGGCGGGATACCTTCCTTGTC-CTGAATCTTGGCCTTCACAT 28463330 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 || | | |||||| | ||||| |||| ||||| || || || ||||| ||||||| Sbjct 28463331 TGTCGATCGTGTCGGATGATTCGACCTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCA 28463390 Query 43097 CAAAAATTTGCATTTTCTT 43115 |||| || ||||||||||| Sbjct 28463391 CAAAGATCTGCATTTTCTT 28463409 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| |||| | || || |||| |||| || || ||||| || Sbjct 38268295 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAA 38268236 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| |||||| || |||| || | ||||| || || |||| | ||||| | Sbjct 38268235 AATCAGTCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 38268176 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| | |||||| || | || || |||||||| || || |||||||| Sbjct 38268175 GTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATTGTTTTTCCCGTAAGGGTTTTCAC 38268116 Query 43098 AAAAATTTGCATTTT 43112 ||| || ||||| || Sbjct 38268115 AAAGATCTGCATCTT 38268101 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || || | || | ||||| ||| |||||| || | || || || | | Sbjct 43442315 CCTCCACGGAGCCTGAGAACAAGATGGAGAGTAGACTCCTTCTGAATGTTATAGTCAGCC 43442374 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | || ||||||||||| ||||| | ||| ||||||| || Sbjct 43442375 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCGGGAGGA 43442434 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| || || || ||| ||||||| || ||| || || | ||| || Sbjct 43442435 ATACCCTCCTTGTCTTGAATCTTGGCTTTGACATTGTCAATAGTATCTGAACTCTCCACC 43442494 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| |||||||||| || || || || |||||||| Sbjct 43442495 TCCAAAGTAATAGTCTTTCCGGTTAATGTCTTAACGAAGATTTGCAT 43442541 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||| || | ||| ||||| | || || | ||||| || || || ||||||||||| Sbjct 32438612 TTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCAGCGAAGATCAATCGCTGC 32438671 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||| | || | ||||||||| || |||| | ||||| || | | |||||| Sbjct 32438672 TGATCCGGAGGAATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCG 32438731 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | |||||| || | || || || || ||||| || |||||||| || || ||||| Sbjct 32438732 GAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTCAGGGTTTTCACGAAGATCTGCATC 32438791 Query 43111 TT 43112 || Sbjct 32438792 TT 32438793 >seq362 Length=95773 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| ||||| ||| |||||| || | |||||||| | ||| |||||| | || || Sbjct 37905 ACCAGATGGAGAGTTGACTCCTTCTGGATGTTGTAATCCGCCAAGGTACGTCCATCCTCT 37846 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| |||||||| || | | ||| ||||| | || | ||||| || || | Sbjct 37845 AGCTGTTTACCGGCAAAGATGAGCCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGG 37786 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 ||| | ||||| || ||| ||||| ||| |||||| || | || || || || Sbjct 37785 ATCTTAGCCTTGACGTTGTCAATGGTGTCAG-AGCTCTCGACCTCGAGAGTAATGGTCTT 37727 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || |||||||| ||||||||||| Sbjct 37726 GCCGGTGAGCGTTTTCACGAAAATTTGCAT 37697 >seq14 Length=60807478 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | |||||||| || | || ||||||||| | ||||| || | Sbjct 28597091 GCCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCCGC 28597150 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| | |||| || | || |||||||| || ||||| | ||| || || | || Sbjct 28597151 CAATGTTCTGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 28597210 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CT-CG 43059 | ||| || || || |||| ||||||| || ||| || ||| ||| || | Sbjct 28597211 AATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTGTCAATAGTATCG-GAGCTCTCCC 28597269 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || ||||||||||| || | || || ||||| || ||||| Sbjct 28597270 ACCTCCAATGTAATAGTTTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 28597319 >seq6 Length=47127078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | || |||| || | || |||||| || | ||||||||| | Sbjct 30236582 GCCTCCACGTAGACGCAAGACCAGGTGAAGCGTAGACTCCTTCTGGATATTGTAATCAGC 30236641 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || | |||| ||||| || || |||||||| || | | ||| ||||| | || Sbjct 30236642 CAAGGTCCTGCCGTCTTCCAACTGCTTACCGGCAAAGATGAGCCTCTGCTGATCAGGAGG 30236701 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CG 43059 | ||||| || || |||| || |||| || || | | ||||| ||| | | Sbjct 30236702 AATGCCTTCCTTGTC-CTGAATCTTGGCTTTAACGTTGTCGATGGTGTCAG-AGCTTTCC 30236759 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || || |||||||| |||||||||||||| || ||||| Sbjct 30236760 ACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 30236809 >seq1 Length=46747018 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | |||||| | ||| | ||| |||||| || | ||||||||| Sbjct 37533735 GCCTCCACGCAGACGTAACACGAGATGAAGAGTAGACTCCTTCTGAATGTTGTAATCGTC 37533676 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||||||||| | || || | || ||||||||||| ||||| ||||| || || | ||| Sbjct 37533675 CAATGTACGACCATCCTCAAGGTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCAGGCGG 37533616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381363204431808