Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 109 6e-19 seq14 100 3e-16 seq6 91.5 1e-13 seq17 87.8 2e-12 seq9 87.8 2e-12 seq362 86.0 6e-12 seq10 86.0 6e-12 seq3 82.4 8e-11 >seq1 Length=46747018 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||| || || || |||||||||||| || |||| || ||||| || Sbjct 20151207 TGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGC 20151266 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || ||||| |||| ||||| |||||||| ||||| |||||||| ||||| ||| || Sbjct 20151267 TTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGAATCTTG 20151326 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | ||||| | | || || |||| || | ||||||||||||| Sbjct 20151327 GCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTC 20151386 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 ||||| || ||||| || ||||| Sbjct 20151387 AATGTCTTAACGAAAATCTGCAT 20151409 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| ||||| || || || |||||||||||| || |||| || ||||| || Sbjct 20187340 TGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGACCATCCTCGAGCTGC 20187399 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || ||||| |||| ||||| |||||||| ||||| |||||||| ||||| ||| || Sbjct 20187400 TTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCTTGAATCTTG 20187459 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | ||||| | | || || |||| || | ||||||||||||| Sbjct 20187460 GCCTTGACGTTGTCAATGGTGTCGGAGCTCTCCACCTCAAGCGTGATCGTCTTGCCGGTC 20187519 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 ||||| || ||||| || ||||| Sbjct 20187520 AATGTCTTAACGAAAATCTGCAT 20187542 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| ||||| || || || |||||||||||| || || || ||||| Sbjct 38965176 ACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCTGCCATCTTCC 38965235 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || |||||| |||||| | ||||| || || || || || |||||||| Sbjct 38965236 AATTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGG 38965295 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | || | ||||| | | ||| || || | ||| | |||||| Sbjct 38965296 ATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTGATCGTCTTT 38965355 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| || || ||||||||||||||| Sbjct 38965356 CCCGTCAACGTCTTAACGAATATTTGCATA 38965385 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| ||||| || || || |||||||||||| || || || ||||| Sbjct 38964948 ACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCTGCCATCTTCC 38965007 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || |||||| |||| || | ||||| |||||||| || || || ||||| Sbjct 38965008 AATTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGG 38965067 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||| | | || | ||||| | || || || | || | |||||| Sbjct 38965068 ATTTTGGCTTTCACATTGTCAATGGTGTCGGAACTCTCCACCTCTAGCGTGATCGTCTTT 38965127 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| || || ||||||||||||||| Sbjct 38965128 CCCGTCAACGTCTTAACGAATATTTGCATA 38965157 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 || || || || || ||||||||||| ||| | || ||| ||| ||||| || || || Sbjct 37533476 GTCGACTCCTTCTGGATGTTGTAATCAGCT-AGGGTTCTCCCGTCCTCGAGCTGCTTTCC 37533418 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 || |||| || | |||||||| ||||| || || || ||||| ||| || ||| Sbjct 37533417 GGCGAAGATAAGCCTCTGCTGATCCGGAGGAATACCCTCCTTGTCTTGAATCTTGGCTTT 37533358 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | |||||| | | ||| || |||| ||| | |||||| || || | ||| Sbjct 37533357 AACATTGTCGATCGTGTCAGAGCTTTCCACCTCAAGAGTGATCGTCTTTCCCGTGAGTGT 37533298 Query 143167 TTTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 37533297 CTTAACGAAGATCTGCAT 37533280 >seq14 Length=60807478 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 142956 GGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGC 143015 ||||||| |||| |||||| || || |||| || || || || || ||||||||||| Sbjct 2749603 GGCCTCCACGTAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCAG 2749662 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || ||| || |||||| || || || |||||| ||||||| | ||||| ||||| | Sbjct 2749663 CCAATGTCCTGCCGTCTTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCGGGGG 2749722 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || || ||||| ||| || || | | || | ||||| | || | Sbjct 2749723 GAATACCCTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCTGAACTCTCCA 2749782 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || | ||| | ||||| || ||||| || || ||||| || |||||| Sbjct 2749783 CCTCCAAAGTAATGGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCATA 2749832 >seq6 Length=47127078 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || |||| || || || || || |||||||| ||| Sbjct 30235670 GCCACCACGGAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 30235729 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || ||||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 30235730 TAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 30235789 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | ||||| | | || || Sbjct 30235790 GATGCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCCAC 30235849 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||||||||||||| || ||||| || ||||| Sbjct 30235850 CTCAAGCGTGATCGTCTTGCCGGTCAATGTCTTAACGAAAATCTGCAT 30235897 >seq17 Length=38882957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||||| |||| || || || || || |||||||| || | Sbjct 3491163 CCTCCACGGAGACGGAGGACTAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCC 3491222 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 3491223 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGA 3491282 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 3491283 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACC 3491342 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | |||||||||||||| || || ||||| || |||||| Sbjct 3491343 TCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCATA 3491390 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || |||| || || || || || |||||||| || | Sbjct 3481065 CCTCCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCC 3481124 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 3481125 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 3481184 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 3481185 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACC 3481244 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | |||||||||||||| || || ||||| || |||||| Sbjct 3481245 TCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCATA 3481292 >seq9 Length=46179939 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || || || | ||| | || || |||| || || ||||| || |||||||| || ||| Sbjct 43441859 CCACCACGGAGACGTAGCACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCT 43441918 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || ||||| || || || ||| |||||| ||| ||||| || ||||| Sbjct 43441919 -AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGG 43441977 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||||||||| ||||| ||| | | || | ||||| | || || Sbjct 43441978 AATGCCTTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCAC 43442037 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||||||||| | || || ||||| || |||||| || Sbjct 43442038 CTCTAGAGTAATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCATACCT 43442089 >seq362 Length=95773 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| ||| ||||| | || || || || || ||||||||||| Sbjct 39291 CCACCACGAAGACGCAGAACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAATCTGCA 39232 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || || ||||||||||| |||| || | || || || ||||| Sbjct 39231 AGCGTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGA 39172 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | ||||| | | ||| ||| Sbjct 39171 ATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACT 39112 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| ||||| || || || ||||||||||| Sbjct 39111 TCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTGACAAATATTTGCAT 39065 >seq10 Length=21498587 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || | |||| || || || || || ||||||||||| | Sbjct 20066202 CCACCACGAAGACGCAACACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 20066261 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || || ||||||||||| |||| || | || || || ||||| Sbjct 20066262 AAAGTCCTACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGA 20066321 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| || || | | || | |||||| | | || ||| Sbjct 20066322 ATCCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTGTCTATCGTGTCTGAGCTCTCAACT 20066381 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| ||||| || || || ||||||||||| Sbjct 20066382 TCCAAGGTTATAGTCTTGCCTGTCAAAGTCTTCACAAATATTTGCAT 20066428 >seq3 Length=51870232 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || |||| || || || || || |||||||| || | Sbjct 22920691 CCTCCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCC 22920750 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || ||||| || || ||||| |||| ||||| ||||| || ||||| Sbjct 22920751 AAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 22920810 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 22920811 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACC 22920870 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | |||||||||||||| || || ||||| || |||||| Sbjct 22920871 TCAAGTGTGATGGTCTTGCCGGTCAAGGTCTTAACGAAAATCTGCATA 22920918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507005679352320