Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq477 192 2e-44 >seq477 Length=38297 Score = 192 bits (212), Expect = 2e-44 Identities = 305/427 (71%), Gaps = 9/427 (2%) Strand=Plus/Minus Query 37392 AATTTCAGCAGGCGGCTGGTATTAGCGCCGGGCTTTCTGCGCGCTGGTATCCGCATATTA 37451 ||||||| |||||||||||| ||||||||| | |||||||||||||||| ||| | Sbjct 24208 AATTTCAATGGGCGGCTGGTATCAGCGCCGGGTTAGCTGCGCGCTGGTATCCTCATCTGC 24149 Query 37452 CGGCGGCAATGAGCGAATTCGGTATTACTGCACCACTGGATCAGGCCATGTTCATTGCAC 37511 || | | || ||| || ||| || ||||| ||||| ||||| | Sbjct 24148 TCGCCACCTTTGCTGAGTTCTCAATCGAGAAGCCAGCGGCACAGGCAATGTTTATTGCTC 24089 Query 37512 AAGTTGGGCATGAATCTGCTGGTTTTACCTCGCT-GGTCGAGAGCTTCAACTACTCGGTA 37570 | |||||||||||||| ||||| |||||| ||| ||| |||||| | |||||| || | Sbjct 24088 AGGTTGGGCATGAATCAGCTGGCTTTACC-CGCACGGTAGAGAGCCTGAACTACACGCCA 24030 Query 37571 GATGGGCTGATGAAAACCTTTGGTAAACGCCTGACGCCGTATCAGTGTGAAATGCTGGGG 37630 | || || | ||||||||| || ||| | || || |||||| || ||||| || Sbjct 24029 CAGGGATTGCTTTCAACCTTTGGGAAGCGCATCACTCCCTATCAGGCTGGCATGCTTGGA 23970 Query 37631 CGTGTCGATGGTAAGCAGGTGGCCCACCAGCCGCAAATAGCCAATCTAGTTTACGGTGGC 37690 ||| | | || | || |||| |||||||| || || || || || |||| | Sbjct 23969 CGTA-CAACGGCA--CACCTGGCAAACCAGCCGGCGATTGCAAACCTGGTATACGCCGAT 23913 Query 37691 CGCATGGGTAACAAAG-ACGCCGGAGATGGCTGGAAGTATCGCGGGCGTGGGCTTATCCA 37749 ||| |||| || ||| |||| || ||||||||||| ||||| ||||||||||| || || Sbjct 23912 CGCCTGGGCAATAAATCACGC-GGTGATGGCTGGAAATATCGTGGGCGTGGGCTGATTCA 23854 Query 37750 GATTACCGGGCTGGAGAATTACACCAG-ATGCGGCGTTGCCCTGAAACTGGATCTGGTGG 37808 | ||||||| | ||| || ||| | || ||||| |||| |||||||| || ||||| | Sbjct 23853 GGTTACCGGCCAGGACAACTAC-CGAGCGTGCGGTATTGCGCTGAAACTCGACCTGGTTG 23795 Query 37809 CGAATCC 37815 ||||| Sbjct 23794 GCAATCC 23788 Score = 93.3 bits (102), Expect = 1e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 27870 TCAGCGAATCATCCGGTCATTCGTATGCCACCGGCGGCTACTTCGTGGGCGTCCTGCCTG 27929 |||||||||||||| | ||||| |||| | |||||||||||||||||||||||||||| Sbjct 33170 TCAGCGAATCATCCCGATCTTCGTGTGCCTCGGGCGGCTACTTCGTGGGCGTCCTGCCTG 33111 Query 27930 TTCGCTGCT 27938 ||||||||| Sbjct 33110 TTCGCTGCT 33102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128353102676032