Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_004685.1 Length=69777 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 4e-16 seq9 98.7 4e-16 >seq18 Length=36757632 Score = 98.7 bits (108), Expect = 4e-16 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 63319 CGCCAGTTGTCGCGCAGGCGCTGGCCGAACGGGTTGTAGCAGGCCCCGCACTTCGGGCAG 63378 |||| || |||||| || | ||||||| | |||||||||||| ||||| || | ||| Sbjct 22719566 CGCC-GTGGTCGCGAAGCCTCTGGCCGCTGGCGTTGTAGCAGGCACCGCAGTTGCGACAG 22719624 Query 63379 TCGATGTCACCCTGCCAGCGGTAGCGGACGATTTCGGCGTCGCAGCGGGCGCAGTTCCAG 63438 || | ||| | ||| | ||||| | | || | |||| || | ||||| ||| Sbjct 22719625 TCCACGTCGCTCTGGCCTCGGTACCTCTGCACCTCATGGCCGCACCGTGAGCAGTCCCAC 22719684 Query 63439 GCGGCGTAGCCGCTTTCGACGATGAAGCCTCGGTCGTCGCGCACGTCGTCGACGTAGCGG 63498 |||||||| ||| |||| |||||| ||| | |||| ||||| | |||||||||||| Sbjct 22719685 GCGGCGTAATCGCCGTCGATGATGAACCCTTCGGCGTCACGCACAGCTTCGACGTAGCGG 22719744 Query 63499 AAGTTCTTTGCAGCCATGAT 63518 |||| || |||||||| Sbjct 22719745 TAGTTGTT---GGCCATGAT 22719761 >seq9 Length=46179939 Score = 98.7 bits (108), Expect = 4e-16 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 63319 CGCCAGTTGTCGCGCAGGCGCTGGCCGAACGGGTTGTAGCAGGCCCCGCACTTCGGGCAG 63378 |||| || |||||| || | ||||||| | |||||||||||| ||||| || | ||| Sbjct 16530778 CGCC-GTGGTCGCGAAGCCTCTGGCCGCTGGCGTTGTAGCAGGCACCGCAGTTGCGACAG 16530720 Query 63379 TCGATGTCACCCTGCCAGCGGTAGCGGACGATTTCGGCGTCGCAGCGGGCGCAGTTCCAG 63438 || | ||| | ||| | ||||| | | || | |||| || | ||||| ||| Sbjct 16530719 TCCACGTCGCTCTGGCCTCGGTACCTCTGCACCTCATGGCCGCACCGTGAGCAGTCCCAC 16530660 Query 63439 GCGGCGTAGCCGCTTTCGACGATGAAGCCTCGGTCGTCGCGCACGTCGTCGACGTAGCGG 63498 |||||||| ||| |||| |||||| ||| | |||| ||||| | |||||||||||| Sbjct 16530659 GCGGCGTAATCGCCGTCGATGATGAACCCTTCGGCGTCACGCACAGCTTCGACGTAGCGG 16530600 Query 63499 AAGTTCTTTGCAGCCATGAT 63518 |||| || |||||||| Sbjct 16530599 TAGTTGTT---GGCCATGAT 16530583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 223157857579968