Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 1e-13 seq9 91.5 1e-13 seq6 91.5 1e-13 seq362 86.0 5e-12 seq7 84.2 2e-11 seq15 82.4 6e-11 >seq14 Length=60807478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || |||||||| || || || || ||||||||||| | | || ||||| Sbjct 2749620 AACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAATGTCCTGCCGTCT 2749679 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || ||||| | |||| | || |||||| ||||| || || ||||| Sbjct 2749680 TCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 2749739 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| |||| ||| | || || || || | | || || || || |||||||| Sbjct 2749740 TGAATCTTGGTCTTGACATTGTCAATAGTGTCTGAACTCTCCACCTCCAAAGTAATGGTC 2749799 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||| || || ||||| |||||| Sbjct 2749800 TTTCCCGTCAAAGTCTTAACGAAAATCTGCATA 2749832 >seq9 Length=46179939 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || ||||| || |||||||| || ||| | | | || || Sbjct 43441877 ACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCTAGGGTGCGACCATCCTCG 43441936 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | |||||||| || ||||| ||||| ||||||||||| Sbjct 43441937 AGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCTTTGTCTTGG 43441996 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || || | || ||||| ||| | | || || |||| |||||||| || Sbjct 43441997 ATTTTGGCTTTCACGTTGTCAATGGTGTCGGAACTCTCCACCTCTAGAGTAATGGTCTTG 43442056 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || || || |||||| Sbjct 43442057 CCGGTAAGGGTCTTCACGAAGATCTGCATA 43442086 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || ||||||||||| || | || ||||||| | || Sbjct 28463201 TGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGTGTCCTTCCGTCTTCCAGCTGC 28463260 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| ||| || ||||| || || ||||| ||||| ||| ||| Sbjct 28463261 TTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATACCTTCCTTGTCCTGAATCTTG 28463320 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || || ||| ||| || |||||||| || || || || || Sbjct 28463321 GCCTTCACATTGTCGATCGTGTCGGATGATTCGACCTCTAAGGTTATCGTCTTCCCCGTT 28463380 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| ||||| || ||||| || Sbjct 28463381 AGGGTTTTCACAAAGATCTGCATTTT 28463406 >seq6 Length=47127078 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || || || || ||||| || |||||||| || |||| |||| | || Sbjct 30236142 AAGACCAAGTGGAGAGTCGACTCTTTCTGAATGTTGTAGTCAGCTAGAGTTCTTCCATCC 30236201 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || || ||||| || ||||||| | || ||||| ||| ||||| || ||||| Sbjct 30236202 TCCAACTGCTTGCCGGCAAATATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCT 30236261 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| | || || || || | || || || || || || || Sbjct 30236262 TGGATCTTGGCCTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTC 30236321 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||| || ||||||||||||||| Sbjct 30236322 TTCCCCGTCAAAGTCTTGACAAAAATTTGCATA 30236354 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || |||||||| || || || || ||||||||||| ||| |||| |||| Sbjct 42172697 AACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCAGCGAGAGTTCTGCCGTCC 42172638 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || ||||| ||| | |||||||| || |||||| ||||| || || ||||| Sbjct 42172637 TCGAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCT 42172578 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || || ||| || || | || ||||| ||| | || || || | || || || Sbjct 42172577 TGGATCTTAGCT-TTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGTGTGATAGT 42172519 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || | ||| || || || || |||||| Sbjct 42172518 CTTTCCGGTTATAGTCTTAACGAAGATCTGCATA 42172485 >seq362 Length=95773 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || || || ||||||||||| || | | | || || Sbjct 39274 AACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAATCTGCAAGCGTGCGACCATCCTC 39215 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| |||||| | || | | |||||||| ||||| ||||| ||||| Sbjct 39214 AAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGAATCCCTTCCTTGTCCTG 39155 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| || ||| ||| | || || || || |||| || || |||||||| || || Sbjct 39154 AATCTTAGCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACTTCCAAGGTAATAGTCTT 39095 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||| || ||||| |||||||| Sbjct 39094 GCCTGTCAAAGTCTTGACAAATATTTGCAT 39065 >seq7 Length=43258566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| || | || || || || ||||| || || ||||| || |||||||| || Sbjct 8774959 TGCCACCCCTAAGCCTCAAGACCAAGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCCG 8774900 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || |||| | ||||||| |||||| |||||| |||||| | ||||| || | Sbjct 8774899 CAAGGGTTCTACCATCTTCTAGTTGTTTACCAGCGAATATCAGCCTCTGTTGATCCGGCG 8774840 Query 15255 GAATTCCTTCTTTGTC 15270 | |||||||||||||| Sbjct 8774839 GTATTCCTTCTTTGTC 8774824 >seq15 Length=39600445 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | ||| | ||||| || || || || || |||||||||||| Sbjct 22431425 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 22431484 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || ||||||| | || || || ||| | |||| || || || || || Sbjct 22431485 AGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGATCCGGCGGG 22431544 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| ||| | || || || ||| ||| || Sbjct 22431545 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCGGATGATTCGACC 22431604 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||||||| || || || || || || ||||| ||||| || ||||| || Sbjct 22431605 TCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 22431654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362173126254816