Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq14 105 6e-18 seq6 102 7e-17 seq1 98.7 8e-16 seq17 95.1 1e-14 seq3 89.7 4e-13 seq9 86.0 5e-12 >seq14 Length=60807478 Score = 105 bits (116), Expect = 6e-18 Identities = 161/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | ||||||| ||| | ||||||||||||||||| ||||| |||||| Sbjct 28597092 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCCGCC 28597151 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| || |||| || ||||| || || || | || | |||||||| ||| || Sbjct 28597152 AATGTTCTGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 28597211 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCT-CCGT 18993 | ||||| ||||| || || ||| || | | | | ||||||| || || Sbjct 28597212 ATACCCTCCTTGTCTTGGATCTTTGCTTTGACGTTGTCAATAGTATCGGAGCTCTCCCAC 28597271 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| ||||| || || || || |||||||| || ||||| Sbjct 28597272 CTCCAATGTAATAGTTTTTCCAGTCAACGTCTTGACAAAGATCTGCAT 28597319 >seq6 Length=47127078 Score = 102 bits (112), Expect = 7e-17 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | |||||||||||| || ||||||||||| |||| || || |||| Sbjct 30236598 AAGACCAGGTGAAGCGTAGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTGCCGTCT 30236657 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| ||| ||||| ||| | || || ||||||||||| || | ||| || ||||| Sbjct 30236658 TCCAACTGCTTACCGGCAAAGATGAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 30236717 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATG 19006 ||| || ||| || | | ||| || | ||| || ||| || | ||| ||| Sbjct 30236718 TGAATCTTGGCTTTAACGTTGTCGATGGT---GTCAGAGCTTTCCACCTCAAGGGTGATG 30236774 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || || || || | |||||| ||||| || ||||| | ||| Sbjct 30236775 GTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGAAA 30236815 >seq1 Length=46747018 Score = 98.7 bits (108), Expect = 8e-16 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||||||||||||| || ||||| || |||| ||| || |||| Sbjct 20152110 AAGACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCCAAAGTTCTGCCGTCT 20152169 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || || | || || |||||||||||| || | ||| || ||||| Sbjct 20152170 TCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 20152229 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATG 19006 ||| || ||| || | | ||| || | ||| || ||| || | ||| ||| Sbjct 20152230 TGAATCTTGGCTTTAACGTTGTCGATGGT---GTCAGAGCTTTCCACCTCAAGGGTGATG 20152286 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || || || || | |||||| ||||| || ||||| | ||| Sbjct 20152287 GTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGAAA 20152327 Score = 98.7 bits (108), Expect = 8e-16 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | ||||||||||||||| || ||||| || |||| ||| || |||| Sbjct 20188243 AAGACCAAGTGGAGCGTAGACTCCTTTTGGATGTTGTAGTCGGCCAAAGTTCTGCCGTCT 20188302 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 || ||||| || || || | || || |||||||||||| || | ||| || ||||| Sbjct 20188303 TCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 20188362 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATG 19006 ||| || ||| || | | ||| || | ||| || ||| || | ||| ||| Sbjct 20188363 TGAATCTTGGCTTTAACGTTGTCGATGGT---GTCAGAGCTTTCCACCTCAAGGGTGATG 20188419 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || || || || | |||||| ||||| || ||||| | ||| Sbjct 20188420 GTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGAAA 20188460 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | |||||||||||| || ||||||||||| |||| || || |||| Sbjct 20151882 AAGACCAAGTGGAGCGTAGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTGCCGTCT 20151941 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| ||| || || || | || || |||||||||||| || | ||||| ||||| Sbjct 20151942 TCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGGATTCCCTCCTTGTCC 20152001 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | ||| || || |||| || | || || || Sbjct 20152002 TGAATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTC 20152061 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || ||||| ||||| ||||| Sbjct 20152062 TTTCCGGTCAACGTCTTGACGAAAATCTGCAT 20152093 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | |||||||||||| || ||||||||||| |||| || || |||| Sbjct 20188015 AAGACCAAGTGGAGCGTAGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTGCCGTCT 20188074 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| ||| || || || | || || |||||||||||| || | ||||| ||||| Sbjct 20188075 TCCAACTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGGATTCCCTCCTTGTCC 20188134 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 ||| || ||| || | | ||| || || |||| || | || || || Sbjct 20188135 TGAATCTTGGCTTTAACGTTGTCGATGGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTC 20188194 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || || ||||| ||||| ||||| Sbjct 20188195 TTTCCGGTCAACGTCTTGACGAAAATCTGCAT 20188226 >seq17 Length=38882957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | |||| ||| | |||||||||||| || || ||||| || ||| Sbjct 3491847 CCACCACGAAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 3491906 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| |||| ||| || || ||| | ||||| |||||||||||| || Sbjct 3491907 AAGGTTCTCCCGTCTTCCAACTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 3491966 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991 | ||| || ||||| || || ||| || | | ||| || | ||| || ||| Sbjct 3491967 ATGCCTTCCTTGTCCTGGATCTTTGCTTTAACGTTGTCGATGGT---GTCAGAGCTTTCC 3492023 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAAT 19048 |||| ||| ||||| || || || | |||||| || || || ||||| | |||| Sbjct 3492024 ACCTCGAGGGTGATGGTCTTCCCGGTGAGAGTTTTCACGAAGATCTGCATCTGAAAT 3492080 >seq3 Length=51870232 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | |||| ||| | |||||||||||| || || ||||| || ||| Sbjct 22921375 CCACCACGGAGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 22921434 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| |||| ||| || || || | ||||| |||||||||||| || Sbjct 22921435 AAGGTTCTCCCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGG 22921494 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || ||| || || || | | ||| || ||| |||| Sbjct 22921495 ATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTCTCCACC 22921554 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| ||| ||||| || || || | |||||| || || || ||||| Sbjct 22921555 TCGAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 22921601 >seq9 Length=46179939 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| |||| | ||||||| ||| | |||||||||||||| || ||||| |||||| Sbjct 43442087 CCTCCACGCAGACGCAACACCAAGTGAAGTGTAGACTCCTTTTGGATGTTGTAGTCCGCC 43442146 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| || |||| || || || || || ||| | || | |||||||| || || Sbjct 43442147 AATGTTCTGCCGTCTTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGAGGA 43442206 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| || || || || | | | | || || | |||| Sbjct 43442207 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAACTCTCCACC 43442266 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||||| || || || | || |||||||| || ||||| Sbjct 43442267 TCTAGAGTAATGGTCTTCCCGGTCAGTGTCTTGACAAAGATCTGCAT 43442313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414565847614144