Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq477 147 8e-31 >seq477 Length=38297 Score = 147 bits (162), Expect = 8e-31 Identities = 278/407 (68%), Gaps = 4/407 (1%) Strand=Plus/Minus Query 10232 TCATCCAGATGGCGAGATTGCTTCAGAATACCAGCCACATACTCCACCTTTGCTACTTGA 10291 || || | |||||| || ||| || || || ||||||||||| || || ||| | Sbjct 31782 TCCTCAACATGGCGCGAAGCCTTGAGGATGCCGGCCACATACTCTACTTTCAGCACTGCA 31723 Query 10292 TGATAAGGCAACGTTATTGGCCTGTGGTCCTGGTTGATGCTTGTAAATTGGTATTCTCCG 10351 | | |||| || ||||| || ||||| || |||||||| ||||| ||||| | || Sbjct 31722 TTTTGCGGCAGTGTGATTGGTCTATGGTCTTGATTGATGCTGGTAAACTGGTAGCCGCCT 31663 Query 10352 TCTCTGTCATAGCCAAGAACTTTGATCATGTTGTGTCCTTCAACAGTTCTGACAAACACC 10411 || | ||| || || || ||||||||||| || ||| | || | || || || Sbjct 31662 TCGCGAGTGTAGTTGAGCACCTTAATCATGTTGTGACCGTCAGCTGTGCGAACGAAAACT 31603 Query 10412 TCATCACCCGGGAAT--ACTTTGGTGTTAGGCTCAATGAGTACATATTCTCCTGATTTTA 10469 |||||||| | ||| ||| |||| || || ||||| || | || || || | | Sbjct 31602 TCATCACCAG--AATGCACTGAGGTGCCTGGTTCGATGAGGACGAACTCACCAGACTGAA 31545 Query 10470 TTCTGGGCCACATGCTGTCTCCTTTCACACGAAGACCAAAGGCATCTGGATCATCGCTAT 10529 | | ||||||||||| || || |||||||| || | |||| || |||||||||| Sbjct 31544 TGCGTGGCCACATGCTATCGCCGCGAACACGAAGCCCGTATGCATTCGGGTCATCGCTAT 31485 Query 10530 AAATTTTGAGCCACCCATCGCGCTCTTCGGTCATCTCGATGGCACCATCAACACCAAGAA 10589 |||| || ||||| ||| | || | ||| ||| ||||| |||||||| || | || Sbjct 31484 AAATCTTCAGCCATCCACCACGGTACTCGACCATGTCGATCATGCCATCAACTCCTAAAA 31425 Query 10590 TTGCCTCACCAACCACGCGCACTAACCCTTTTCTTACCTGACCGACA 10636 || |||||||| || | || | |||| || |||| || ||| Sbjct 31424 CGGCATCACCAACAACAGGGACAAGCCCTGGTCGAACCTTGCCTACA 31378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185251372943104