Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq82 170 2e-37 >seq82 Length=657493 Score = 170 bits (188), Expect = 2e-37 Identities = 281/404 (70%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 142219 TTTTCATCCACGCCTTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCAC 142278 ||||| || | ||| | |||||||| | |||||||| | || | ||| || ||||| Sbjct 460866 TTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCAT 460925 Query 142279 ATTGGATAATACGCTGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTTACT 142338 ||||||||| | || || || ||||| | || || ||||||||||| |||||||| Sbjct 460926 ATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACA 460985 Query 142339 GCAGTTTGGAAATGTTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCATACCG 142398 ||| |||| |||||||| | || |||||| ||| ||||| |||| || | | Sbjct 460986 GCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTA 461045 Query 142399 ATCTTAGAACCTTCTGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTTTAGAA 142458 || | |||| ||||||||| | ||| | || ||||| || || ||||||| |||| Sbjct 461046 ATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAA 461105 Query 142459 ATATATTCAATAATTGATGCTGAAGTTTTGTTAATAGATTTTAACGAATCACCGGCTTCA 142518 | ||||| | ||| || | ||| ||||||||| | || |||| | |||| Sbjct 461106 ACATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCA 461165 Query 142519 ATAACTACAC---AACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGG 142575 || | |||| | ||| || || ||||| ||||| | | | || | ||||||||| Sbjct 461166 ATTAAAACACATGAGCTA---AATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGT 461222 Query 142576 GTTGGCAATGAAACTTGATGAGTAGAAACGGCATCATAAAAACG 142619 || || || |||| || ||| |||| ||||| ||||||||| Sbjct 461223 GTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACG 461266 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 140456 AATCTCATCAAATACTTTGGATGGATCGGTATAAAGATTTCGCATAATATGAGTATATGA 140515 ||| |||||||||| | |||||| || || ||||| |||||||||||||| || Sbjct 459081 AATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGAGTATAAGA 459140 Query 140516 ACGAGAGTGAATAGTTTCACTGAATGTCCATGTTGCAACCCACGTATCTAATGAAGGGTC 140575 ||| |||||||||||||| || | ||||||| ||| ||| || |||||| || Sbjct 459141 ACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAATTCCGGAAT 459200 Query 140576 GGAAATCAGTGCCATAAGTACCGCAGATGGGGC-CCTGCCTTGGATAGAATCCAATAATG 140634 ||||| | || | || | | | | || | || ||||| ||||| || ||||||| Sbjct 459201 AGAAATAATTGGTAGAA-AAGCAATGTTAGGACTTCTTCCTTGAATAGAGTCTAATAATG 459259 Query 140635 ATTGATACTTAAGATT 140650 |||||| || | ||| Sbjct 459260 TTTGATATTTTAAATT 459275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536054779699200