Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 1e-11 >seq1 Length=46747018 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || ||||| || || || |||||||| | ||| | || ||| Sbjct 38965176 ACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCTGCCATCTTCC 38965235 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||||||| ||| || || | |||||||| | || || || ||||| || Sbjct 38965236 AATTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGG 38965295 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || | | ||| |||||| | || ||| |||| ||| ||||| ||| Sbjct 38965296 ATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTGATCGTCTTT 38965355 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| | || || ||||| |||||||| Sbjct 38965356 CCCGTCAACGTCTTAACGAATATTTGCAT 38965384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318772254099648