Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq82 158 1e-33 >seq82 Length=657493 Score = 158 bits (174), Expect = 1e-33 Identities = 304/446 (68%), Gaps = 2/446 (0%) Strand=Plus/Plus Query 135785 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 135844 ||||| |||||||| ||||| | ||||||| ||||| | | || ||||| | || Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 135845 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135904 | |||| || ||||| || | | |||||||| || |||||||| ||||| ||| | | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 135905 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135964 ||| ||||| || || | || || ||||| || || || || || ||| | |||||||| Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 135965 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTC 136024 ||| | || || ||| ||||||||| |||| |||| | || | ||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 136025 CGCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATGAT 136084 || ||||| | ||||| || ||||| || || || || | || ||| || | || Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 136085 TGCATTTGCTGTTTCGTTGATGCCCTGCA-ATGAGTCATCACTTTCAATCACCACGCACG 136143 | | | | || |||| || | | || | ||||||| |||||| | || || | Sbjct 461120 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTA-TCATCACATTCAATTAAAACACATG 461178 Query 136144 AACTAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGATTT 136203 | ||||||||||| || ||||| | || || | |||||| || || || | ||| |||| Sbjct 461179 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 461238 Query 136204 GCTTATTCGCAACAGCATTATAAAAA 136229 | | | || |||||||||||| Sbjct 461239 TGAAAGTTGAAATGGCATTATAAAAA 461264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524720574650880