Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 1e-12 seq1 84.2 2e-11 >seq10 Length=21498587 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||| | | |||||||| |||||| |||||| || || || ||||| Sbjct 20067113 ACCACCTCTCAGACGAAGTACCAAATGGAGCGTGGACTCTTTCTGGATGTTGTAATCAGC 20067172 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | || |||| |||| || || ||||| || || | | |||||||| | || Sbjct 20067173 GAGTGTGCGTCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGTCTCTGCTGGTCTGGTGG 20067232 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || || ||| ||| |||||| | ||| || || | ||| || Sbjct 20067233 GATGCCTTCCTTGTCCTGAATCTTTGCTTTGACGTTGTCAATCGTGTCAGAGCTCTCAAC 20067292 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||||||||| || ||||| ||||| || ||||| Sbjct 20067293 CTCCAAGGTAATTGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 20067340 >seq1 Length=46747018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || ||||| ||| || ||||| || |||||| || | |||| ||| Sbjct 38965176 ACCAAGTGAAGCGTAGACTCCTTCTGAATGTTGTAATCGGCCAAGGTCCTGCCATCTTCC 38965235 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||| ||||| ||||| ||||||| |||||||| | || | ||| ||||| ||| Sbjct 38965236 AATTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGG 38965295 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || |||||| | ||| ||| || | || || || | || || || || Sbjct 38965296 ATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCAACCTCCAAAGTGATCGTCTTT 38965355 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| || ||||||||||| Sbjct 38965356 CCCGTCAACGTCTTAACGAATATTTGCAT 38965384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354771650379648