Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq82 163 4e-35 >seq82 Length=657493 Score = 163 bits (180), Expect = 4e-35 Identities = 278/403 (69%), Gaps = 0/403 (0%) Strand=Plus/Plus Query 43625 TTGTTGATTTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTG 43684 || || ||||| | | || |||| || || | || ||||||||| | |||| | || Sbjct 460827 TTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTA 460886 Query 43685 TTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCA 43744 ||||| | ||| | | |||||| ||||| |||||| |||||||| | | ||| || Sbjct 460887 TTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCC 460946 Query 43745 GCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAG 43804 || ||||| | || || || || || || |||||| ||| | || |||| ||| | Sbjct 460947 GCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAA 461006 Query 43805 AACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGA 43864 || |||||| |||||| || |||| ||| ||| ||| || |||| | |||||| Sbjct 461007 AAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGA 461066 Query 43865 ATAGCGCCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTT 43924 || ||| | || ||||| || || || |||| || ||| | || || ||||| Sbjct 461067 ATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTA 461126 Query 43925 GCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAAC 43984 | ||||||||||| ||| || | || | | ||| || || ||||||||||| Sbjct 461127 GTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAAT 461186 Query 43985 TGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTA 44027 || ||||| || |||| ||| |||| | |||||| ||||||| Sbjct 461187 TGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTA 461229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746207965002240