Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq1048 165 2e-36 >seq1048 Length=3623 Score = 165 bits (182), Expect = 2e-36 Identities = 234/329 (71%), Gaps = 0/329 (0%) Strand=Plus/Minus Query 13165 TGGACTACGGCGGAGTTTATCGCCTGGCTGGAGAGTTGCGGCGCATTCAATCACCCGTAC 13224 |||||||| || || |||||||| |||||| || | || || ||| | |||||| Sbjct 1808 TGGACTACCGCTGAATTTATCGCATGGCTGAAGGAGCGTGGTGCTTTCGAAGTGCCGTAC 1749 Query 13225 TGGATGTGTAAAGGGGCGTGGGATTATACAGGTAACAAAGTCATCACAGATACAGGGTGC 13284 |||||| || || | ||| ||| | | || ||| | ||||| |||||||| | Sbjct 1748 TGGATGATGAAGGGTTCCTGGTCATATGCCGACAATAAAATTATCACTGATACAGGTGTC 1689 Query 13285 GGTAATATCTGTCTCGCTGGCGCTGTGGTGGAGGTTATGGGGGCTGGCGGTGCGATTACC 13344 |||||||||||||| ||||| || || | |||||| | || | | || || || ||| Sbjct 1688 GGTAATATCTGTCTTGCTGGTGCGGTTATCGAGGTTTTAGGTACCGAAGGCGCAATGACC 1629 Query 13345 ATTCGGGTGACAACGCCCACCACAACATCAGGTGGTGGAATTGCCAGTGCTCAGTTTACC 13404 || || || || ||||| || || || | |||||||| |||||| |||||||||| ||| Sbjct 1628 ATCCGAGTTACTACGCCTACAACGACTACCGGTGGTGGGATTGCCTGTGCTCAGTTCACC 1569 Query 13405 TATATCAATCACGGCGATGGATATGCTCCGGGATGGCGACGCGATTTCAACACCATAAAT 13464 ||||| |||||||| | ||||| || | ||||| | |||| |||||| Sbjct 1568 TATATTAATCACGGTAGCGCGTATGCCCCTGCCTGGCGCAGAGATTACAACACTGCTCTC 1509 Query 13465 AAACCCACTCCCGAAGATGTAGGGGCGTT 13493 ||||||||| | | ||||| || ||||| Sbjct 1508 AAACCCACTGCGGCTGATGTCGGTGCGTT 1480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97912000091776