Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq82 122 2e-23 >seq82 Length=657493 Score = 122 bits (134), Expect = 2e-23 Identities = 232/342 (68%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 21569 ACCAAGCATTTGCATGGTTCCACCAACGCCTACGATAACTTCGGTAGTGAACCTATCCTG 21628 ||| ||||||||||| || || |||| ||| | || ||| |||||| | | || Sbjct 205862 ACCTAGCATTTGCATTGTACCTCCAATATTTACAACAATTTCTGTAGTGTAGCGTTCTAA 205921 Query 21629 TCCGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAGCC 21688 || ||||||||||||||||||| || ||||| ||||||| ||| || | ||| || Sbjct 205922 ACCATTTTGATCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAGAACC 205981 Query 21689 TTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACGCGGTGCCA 21748 |||||| |||||||||| |||||||| || | ||| || | || | | ||||| Sbjct 205982 TTTTCGAAGATATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTATGCCA 206041 Query 21749 CTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAAC 21808 || || | || || | |||||||| | ||||| ||| | |||||| || || | Sbjct 206042 TTCAGTTTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAA 206101 Query 21809 TGTAAGGTTTGCAAATGCCGTTCCTGATGGTGAATATCTGATTTCTGGATCATGCCCAAG 21868 ||| | || | | || | || || ||| | | ||| ||||| || || | Sbjct 206102 TGTCATATTCACTACCGCATTACCATTAGGCATATAACGAACTTCAGGATCTTGACCTAA 206161 Query 21869 GCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCAT 21910 | ||||| | || || |||||||| ||||| || ||||| Sbjct 206162 ATGCCCAATCAGAATAACTTTATTTACACCTCTACTAGCCAT 206203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124813960506560