Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_005355.1 Length=40190 Score E Sequences producing significant alignments: (Bits) Value seq137 84.2 6e-12 >seq137 Length=409738 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 15567 AAGGTGGTGTGGTGATATGTCATGAGCAAAATAGAAGAT---GCAAAAGCAGATTACTTA 15623 ||||||||| |||||| || ||| ||| | | || || ||| ||||||| | Sbjct 14442 AAGGTGGTG-GGTGATGTGAAGTGAAACAAAAACACGAGTTAGCTCAAGAAGATTACATG 14384 Query 15624 GCAGGAATGAAGTACAAAGATATTGCTAAGAAATATGAAGTTGCATTAAGTACTGTTAAG 15683 ||| |||||||| || ||||| ||| ||||| |||| ||| ||| ||||||||| Sbjct 14383 CAAGGTATGAAGTATAAGGATATAGCTGAGAAACATGATGTTAGTGTAAACACTGTTAAG 14324 Query 15684 TCATGGAAGACTAGAAATAAGTGG 15707 ||||||||||| ||| |||| ||| Sbjct 14323 TCATGGAAGACCAGATATAAATGG 14300 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 15567 AAGGTGGTGTGGTGATATGTCATGAGCAAAATAGAAGAT---GCAAAAGCAGATTACTTA 15623 ||||||||| |||||| || ||| ||| | | || || ||| ||||||| | Sbjct 57400 AAGGTGGTG-GGTGATGTGAAGTGAAACAAAAACACGAGTTAGCTCAAGAAGATTACATG 57342 Query 15624 GCAGGAATGAAGTACAAAGATATTGCTAAGAAATATGAAGTTGCATTAAGTACTGTTAAG 15683 ||| |||||||| || ||||| ||| ||||| |||| ||| ||| ||||||||| Sbjct 57341 CAAGGTATGAAGTATAAGGATATAGCTGAGAAACATGATGTTAGTGTAAACACTGTTAAG 57282 Query 15684 TCATGGAAGACTAGAAATAAGTGG 15707 ||||||||||| ||| |||| ||| Sbjct 57281 TCATGGAAGACCAGATATAAATGG 57258 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 15567 AAGGTGGTGTGGTGATATGTCATGAGCAAAATAGAAGAT---GCAAAAGCAGATTACTTA 15623 ||||||||| |||||| || ||| ||| | | || || ||| ||||||| | Sbjct 100121 AAGGTGGTG-GGTGATGTGAAGTGAAACAAAAACACGAGTTAGCTCAAGAAGATTACATG 100063 Query 15624 GCAGGAATGAAGTACAAAGATATTGCTAAGAAATATGAAGTTGCATTAAGTACTGTTAAG 15683 ||| |||||||| || ||||| ||| ||||| |||| ||| ||| ||||||||| Sbjct 100062 CAAGGTATGAAGTATAAGGATATAGCTGAGAAACATGATGTTAGTGTAAACACTGTTAAG 100003 Query 15684 TCATGGAAGACTAGAAATAAGTGG 15707 ||||||||||| ||| |||| ||| Sbjct 100002 TCATGGAAGACCAGATATAAATGG 99979 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 15567 AAGGTGGTGTGGTGATATGTCATGAGCAAAATAGAAGAT---GCAAAAGCAGATTACTTA 15623 ||||||||| |||||| || ||| ||| | | || || ||| ||||||| | Sbjct 143053 AAGGTGGTG-GGTGATGTGAAGTGAAACAAAAACACGAGTTAGCTCAAGAAGATTACATG 142995 Query 15624 GCAGGAATGAAGTACAAAGATATTGCTAAGAAATATGAAGTTGCATTAAGTACTGTTAAG 15683 ||| |||||||| || ||||| ||| ||||| |||| ||| ||| ||||||||| Sbjct 142994 CAAGGTATGAAGTATAAGGATATAGCTGAGAAACATGATGTTAGTGTAAACACTGTTAAG 142935 Query 15684 TCATGGAAGACTAGAAATAAGTGG 15707 ||||||||||| ||| |||| ||| Sbjct 142934 TCATGGAAGACCAGATATAAATGG 142911 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 15567 AAGGTGGTGTGGTGATATGTCATGAGCAAAATAGAAGAT---GCAAAAGCAGATTACTTA 15623 ||||||||| |||||| || ||| ||| | | || || ||| ||||||| | Sbjct 185931 AAGGTGGTG-GGTGATGTGAAGTGAAACAAAAACACGAGTTAGCTCAAGAAGATTACATG 185873 Query 15624 GCAGGAATGAAGTACAAAGATATTGCTAAGAAATATGAAGTTGCATTAAGTACTGTTAAG 15683 ||| |||||||| || ||||| ||| ||||| |||| ||| ||| ||||||||| Sbjct 185872 CAAGGTATGAAGTATAAGGATATAGCTGAGAAACATGATGTTAGTGTAAACACTGTTAAG 185813 Query 15684 TCATGGAAGACTAGAAATAAGTGG 15707 ||||||||||| ||| |||| ||| Sbjct 185812 TCATGGAAGACCAGATATAAATGG 185789 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 15567 AAGGTGGTGTGGTGATATGTCATGAGCAAAATAGAAGAT---GCAAAAGCAGATTACTTA 15623 ||||||||| |||||| || ||| ||| | | || || ||| ||||||| | Sbjct 357412 AAGGTGGTG-GGTGATGTGAAGTGAAACAAAAACACGAGTTAGCTCAAGAAGATTACATG 357354 Query 15624 GCAGGAATGAAGTACAAAGATATTGCTAAGAAATATGAAGTTGCATTAAGTACTGTTAAG 15683 ||| |||||||| || ||||| ||| ||||| |||| ||| ||| ||||||||| Sbjct 357353 CAAGGTATGAAGTATAAGGATATAGCTGAGAAACATGATGTTAGTGTAAACACTGTTAAG 357294 Query 15684 TCATGGAAGACTAGAAATAAGTGG 15707 ||||||||||| ||| |||| ||| Sbjct 357293 TCATGGAAGACCAGATATAAATGG 357270 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 15567 AAGGTGGTGTGGTGATATGTCATGAGCAAAATAGAAGAT---GCAAAAGCAGATTACTTA 15623 ||||||||| |||||| || ||| ||| | | || || ||| ||||||| | Sbjct 400281 AAGGTGGTG-GGTGATGTGAAGTGAAACAAAAACACGAGTTAGCTCAAGAAGATTACATG 400223 Query 15624 GCAGGAATGAAGTACAAAGATATTGCTAAGAAATATGAAGTTGCATTAAGTACTGTTAAG 15683 ||| |||||||| || ||||| ||| ||||| |||| ||| ||| ||||||||| Sbjct 400222 CAAGGTATGAAGTATAAGGATATAGCTGAGAAACATGATGTTAGTGTAAACACTGTTAAG 400163 Query 15684 TCATGGAAGACTAGAAATAAGTGG 15707 ||||||||||| ||| |||| ||| Sbjct 400162 TCATGGAAGACCAGATATAAATGG 400139 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 15567 AAGGTGGTGTGGTGATATGTCATGAGCAAAATAGAAGAT---GCAAAAGCAGATTACTTA 15623 ||||||||| |||||| || ||| ||| | | || || ||| ||||||| | Sbjct 404131 AAGGTGGTG-GGTGATGTGAAGTGAAACAAAAACACGAGTTAGCTCAAGAAGATTACATG 404073 Query 15624 GCAGGAATGAAGTACAAAGATATTGCTAAGAAATATGAAGTTGCATTAAGTACTGTTAAG 15683 ||| |||||||| || ||||| ||| ||||| |||| ||| ||| ||||||||| Sbjct 404072 CAAGGTATGAAGTATAAGGATATAGCTGAGAAACATGATGTTAGTGTAAACACTGTTAAG 404013 Query 15684 TCATGGAAGACTAGAAATAAGTGG 15707 ||||||||||| ||| |||| ||| Sbjct 404012 TCATGGAAGACCAGATATAAATGG 403989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128484300532224