Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq16 82.4 5e-11 >seq16 Length=39632211 Score = 82.4 bits (90), Expect = 5e-11 Identities = 181/269 (67%), Gaps = 7/269 (3%) Strand=Plus/Plus Query 25446 TAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAA 25505 || |||||||| || || | |||||||| || || || | || | |||| | Sbjct 38024990 TACACGTGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGTTCACACACGTGA 38025049 Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || | |||| | || || ||| ||||| ||||||||||| || || || | ||||| Sbjct 38025050 GCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGGCCCATA 38025109 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTG--- 25622 | || |||| | ||| || | ||| ||||||||||| | || ||| || ||||| Sbjct 38025110 T-CCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAACTGCGC 38025168 Query 25623 ACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCA 25682 | ||| ||| |||||||||||| || || || | || ||||||||| || | Sbjct 38025169 AAACA---TGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCAGA 38025225 Query 25683 CACGATGATGCACCTGTCTTCTGGGTTGT 25711 | ||||| | || || || || |||| Sbjct 38025226 TAATATGATACGCCGATCATCAGGATTGT 38025254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340131895892448