Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq15 1112 0.0 seq82 403 1e-107 seq1048 138 7e-28 >seq15 Length=39600445 Score = 1112 bits (1232), Expect = 0.0 Identities = 630/639 (99%), Gaps = 0/639 (0%) Strand=Plus/Plus Query 22625 GGGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT 22684 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016487 GGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGT 30016546 Query 22685 CATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCT 22744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016547 CATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCT 30016606 Query 22745 GCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCA 22804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016607 GCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCA 30016666 Query 22805 GCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGT 22864 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016667 GCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGT 30016726 Query 22865 CAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGAATA 22924 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 30016727 CAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATA 30016786 Query 22925 CGTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCG 22984 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 30016787 CGTGCGCAACAACCGTCTTCCGGAGACTGTCATACGCGTAAAACAGCCAGCGCTGGCGCG 30016846 Query 22985 ATTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGC 23044 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 30016847 ATTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGC 30016906 Query 23045 CCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGT 23104 ||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct 30016907 CCGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGT 30016966 Query 23105 GTTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGCCAT 23164 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 30016967 GTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCAT 30017026 Query 23165 ATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCA 23224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30017027 ATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCA 30017086 Query 23225 TGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC 23263 ||||||||||||||||||||||||||||||||||||||| Sbjct 30017087 TGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCC 30017125 Score = 307 bits (340), Expect = 6e-79 Identities = 170/170 (100%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 23224 ATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTAC 23283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30017245 ATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTAC 30017304 Query 23284 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAG 23343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30017305 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAG 30017364 Query 23344 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC 23393 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30017365 CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC 30017414 >seq82 Length=657493 Score = 403 bits (446), Expect = 1e-107 Identities = 878/1303 (67%), Gaps = 20/1303 (2%) Strand=Plus/Plus Query 71337 GCAGAACAAGCTGTACTTGGTGGCTTAATGCTTGATAACTGCCGCTGGGATGAAGTTGCA 71396 ||||||||| ||||| | || || || ||| | ||||| | |||||| |||| || Sbjct 206795 GCAGAACAATCTGTATTAGGCGGTTTGATGTTAGATAATGAACAATGGGATACAGTTTCA 206854 Query 71397 GATCGTATAGTTGCTGATGATTTTTATACCAGTGCTCATCGTGAAAT-TTTCAGTGAGAT 71455 || | | | ||||| |||||||||| || | |||||||| ||| ||||| || || Sbjct 206855 GAACATGTTGTTGCCGATGATTTTTTTAGTAAGCCTCATCGTTTAATATTTCAA-GAAAT 206913 Query 71456 GGAGAGG-TTATTAAGTCATGGCAAACCGATTGATTTGATAACACTTGCTGAAGCACTTG 71514 | | | || || | | | || | || |||||||| ||||| || ||||| | | | Sbjct 206914 GCAAAAACTTCTTGATTTA-GGATATCCTATTGATTTAATAACCCTATCTGAATCTTTAG 206972 Query 71515 AACAGAACGGTAAATTAGAACGCGCCGGTGGTTTTGCGTACCTTGCGGAGATGTCAAAGA 71574 |||| || ||||| |||||| ||| ||| | ||| | || | || || ||||||| | Sbjct 206973 AACAAAAAGGTAAGTTAGAAAGCGTAGGTAGATTTTCTTATTTAGCTGAACTGTCAAAAA 207032 Query 71575 ACACGCCCAGCTCGGCAAATATTTGTGCTTATGCGGATATCGTTCGTGAACGCGCGGTTG 71634 |||| || ||| | ||||||||| ||| ||||| || || || | ||||| || | | Sbjct 207033 ACACTCCTAGCACAGCAAATATTACTGCATATGCAGACATAGTAAGAGAACGTGCAATAG 207092 Query 71635 TTCGTGAAATGATTTCCGTCGCAAATGAAATAGCCGAAGCTGGATATG---CGCA-GGAT 71690 | | |||||||| | || |||||| ||||||| | |||||||||| |||| ||| Sbjct 207093 TCAGAGAAATGATATTAGTAGCAAATAAAATAGCTAATGCTGGATATGACACGCAAGGAC 207152 Query 71691 GGCAGGGGCAGCAATGAATTGCTGGATATGGCCGAGCGCCGCGTTTTTGAAATAGCTGAA 71750 | | || | ||| | || ||| || || | || || |||| || ||| Sbjct 207153 GAAAA----AGTGAAGAACTACTAGATTATGCAGAATCTAGTGTATTCAAAATTGCAGAA 207208 Query 71751 AAACGAC--AAAAGAGCGGTAGTGGTCCAAAAGATATCGCCAGCATTCTCGATGCAACGG 71808 ||||| |||| || || |||| ||| | | | || || |||| ||| | Sbjct 207209 AAACGTTTTAAAAAAGACTCAG--GTCCTAAAAACGTAGAACAAATACTTGATGAAACTG 207266 Query 71809 TATCTCGCATAGAAGAGTTGTTTCAGCGACCACATGATGGTGTAACGGGGCTTGATACGG 71868 | || | |||||| | || |||| |||||||||||| ||||| || || |||| | Sbjct 207267 TGGCTAGTATAGAAAAATTATTTCTATCACCACATGATGGAGTAACTGGAATTAATACAG 207326 Query 71869 GATTTACC--GATCTCAATAAGAAGACGGCAGGGCTTCAGCCGTCCGATCTCATCATTGT 71926 ||| ||| ||| | ||||| || ||| |||| | || | || || || || ||| | Sbjct 207327 GAT--ACCAAGATTTAAATAAAAAAACGTCAGGTTTACAACGTTCTGAACTAATTATTAT 207384 Query 71927 CGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAATGCCGC 71986 ||||| | ||||||||||| || || || ||||| |||||| | |||||||| || Sbjct 207385 TGCCGCAAGACCATCTATGGGAAAAACAACATTTGCAATGAATTTATGTGAAAATGCTGC 207444 Query 71987 AGTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAGCTGAT 72046 | | | | | ||||| || ||||| ||||||| | || ||||| | | || | || Sbjct 207445 AATGCTTTATGATAAACCAGTATTAATTTTTAGTTTAGAAATGCCAGGAGAACAAATTAT 207504 Query 72047 GATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACAGGGCAACT 72106 |||||| | || || | | | ||| |||| | || ||||| || || ||||| Sbjct 207505 GATGCGGATGTTAGCATCATTATCTAGAGTTAATCAAGCACGAATTCGTACTGGACAACT 207564 Query 72107 TAACGACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAA 72166 ||||| || |||||| | || | ||||| | || | || | | || |||| Sbjct 207565 AAACGATGAAGATTGGTCACGCATGTCTGGTACTATTAACGTACTACTTAAAAAAAAGAA 207624 Query 72167 TATTTTTATTGATGACTCAAGCGCCCTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCG 72226 ||| | |||||||||||| || | || || | || | ||||| | |||||||| Sbjct 207625 TATATATATTGATGACTCTTCAGCATTAACTCCTAATGAAGTTCGTTCAAGAGCTCGTCG 207684 Query 72227 TGTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCG 72286 | |||| |||||| || | | | || ||| | || || | ||||| ||| | Sbjct 207685 TATTTACCGTGAAAATAACGGGCTAACTTTAATAATGGTAGATTATTTACAACTAATGAG 207744 Query 72287 CGTCCCCGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAA 72346 || || || || || || || || |||||||| || || ||| | | || || Sbjct 207745 AGTACCATCTCTATCTGAAAATCGTACACTAGAAATTGCAGAAATATCTAGGACTCTAAA 207804 Query 72347 GGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCT 72406 || | || || |||||||||||||| || | ||| | |||||||| || || || | Sbjct 207805 AGCACTTGCAAAAGAATTACAAGTACCAGTTATTGCACTCTCACAACTGAACCGTTCTTT 207864 Query 72407 TGAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGA 72466 ||||| | | || ||| |||| || ||||||||||||||||||||||| | | || Sbjct 207865 AGAACAAAGATCTGATAAAAGACCTGTCAATTCAGATTTACGTGAATCAGGTTCTTTGGA 207924 Query 72467 GCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGA 72526 || || || ||| | || ||||| | |||||||| ||| ||||||| |||| || Sbjct 207925 ACAAGATGCTGACTTAATAATGTTCATATATCGCGATGAAATTTATCATGAAAATAGTGA 207984 Query 72527 AATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGT 72586 | || || || || || | || || ||||| ||| ||||||| || |||||||| || Sbjct 207985 TTTCAAAGGAATAGCAGAAATTATAATAGGAAAACAAAGAAATGGTCCTATTGGCACAGT 208044 Query 72587 GAGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAACTAT 72629 | ||| |||| || || || | || | |||||||| ||| Sbjct 208045 TTGTTTGACTTTCAATGGACACTGGTCTAGATTTGATAATTAT 208087 Score = 105 bits (116), Expect = 4e-18 Identities = 220/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 |||||||| ||||| || |||||||| | || ||||| || || | | ||||| Sbjct 206191 GGTGTAAATAAAGTTATTCTGATTGGGCATTTAGGTCAAGATCCTGAAGTTCGTTATATG 206132 Query 21123 CCAAATGGCGGCGCGGTCG-GAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAA 21181 || ||||| ||||| | ||| | | | | ||||| ||| ||| || || Sbjct 206131 CCTAATGGTAATGCGGTAGTGAATA-TGACATTAGCAACTTCAGAAAATTGGAAAGATAA 206073 Query 21182 GCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACT 21241 | || || || | ||||| |||| |||||||||| | | ||||| || || ||| | Sbjct 206072 AAATACTGGAGAAAATAAAGAAAAAACTGAATGGCATAGAATAGTTTTATTTGGTAAATT 206013 Query 21242 TGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACT 21301 ||||||||||| | || ||| | |||||||||||||| || || || ||||| | | Sbjct 206012 AGCTGAAATTGCAGGCGAATATCTTCGAAAAGGTTCTCAAGTATATATTGAAGGATCATT 205953 Query 21302 TAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGT 21361 |||| | || ||| ||| | ||| ||||||| ||||| || |||||| | || Sbjct 205952 GCAAACTAGAAAATGGCAGGATCAAAATGGTTTAGAACGCTACACTACAGAAATTGTTGT 205893 Query 21362 CAGCCAGGGCGGCACCATGCAAATG 21386 | || || || ||||||||| Sbjct 205892 AAATATTGGAGGTACAATGCAAATG 205868 Score = 96.9 bits (106), Expect = 2e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 70928 AATCCGGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTT 70987 ||| |||||||||||||||||||| ||||| |||||||||||||||| |||| | |||| Sbjct 216767 AATACGGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTT 216826 Query 70988 CAAGTCCGGTAGGGGCCA 71005 ||| ||| | |||||||| Sbjct 216827 CAAATCCAGCAGGGGCCA 216844 >seq1048 Length=3623 Score = 138 bits (152), Expect = 7e-28 Identities = 245/354 (69%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 36025 GTATAGACCTGCGCCCATTCAGACCAGTTGGCAGAATCAGTATCCCGCCGCGAACGGATA 36084 || |||||||||||||| |||||||||| || | ||||| || || ||||| ||| Sbjct 1888 GTGTAGACCTGCGCCCAACCAGACCAGTTCGCTCCCACTGTATCACGGCGAGAACGAATA 1947 Query 36085 TGTACGGGCGCATGGGCACCGCTCGTGCCACTCCAGCCAATGAATAACTCACCTTCGCCA 36144 | || |||||||| || || | ||||||||||||| | | ||| || || ||| Sbjct 1948 TAAACCGGCGCATGAGCGCCATCTGACCCACTCCAGCCAACAAGCAGCTCGCCCTCACCA 2007 Query 36145 GCAGCGGTGGCACCTTTAAGGTGAAGCACATTGCCATAGGGGGAAGGGTAGCCATTGTTG 36204 || || ||||| | || || | ||||| ||| | || ||||||||||| Sbjct 2008 CTTGCTTGTGCGCCTTTCATATGCAGGATGTTGCCGTAGCTTGTCGGATAGCCATTGTTA 2067 Query 36205 TATGCCTCATACAGCTGAATCCCGG---ATGTTCCCTGTGCATTCGCCTCCAGGGCCGTT 36261 || || || |||| |||||| || | || ||||| ||||| ||||||| || | Sbjct 2068 TAGGCTTCGTACATCTGAATGCCTGGCATTGCGCCCTGAACATTCCCCTCCAGTGCGCTA 2127 Query 36262 ACGCGACCGCGCGATACCAGAGTATTGATATTAATGTCACCAGAACCATCGAACCTGACG 36321 | ||| || || || ||||| || ||| |||||| |||| ||||||||| | || Sbjct 2128 ATGCGCCCACGAGACACCAGTGTCGGGATGGTAATGTTGGCAGAGCCATCGAACGTTACA 2187 Query 36322 CCATTAA-TGTTTCTGGCTGTTTTCAATTTCGTTGCGGTATCGGCGTTCCCTGT 36374 | |||| ||| |||| |||| || ||| ||||| || |||| || || || Sbjct 2188 CTGTTAATTGTCCGTGGC-GTTTGCAGTTTGGTTGCAGTGGCGGCATTACCAGT 2240 Score = 138 bits (152), Expect = 7e-28 Identities = 245/354 (69%), Gaps = 5/354 (1%) Strand=Plus/Minus Query 32331 ACAGGGAACGCCGATACCGCAACGAAATTGAAAACAGCCAGAAACA-TTAATGGCGTCAG 32389 || || || |||| || ||||| ||| || |||| |||| ||| |||| | || | Sbjct 2240 ACTGGTAATGCCGCCACTGCAACCAAACTGCAAAC-GCCACGGACAATTAACAGTGTAAC 2182 Query 32390 GTTCGATGGTTCTGGTGACATTAATATCAATACTCTGGTATCGCGCGGTCGCGTAACGGC 32449 ||||||||| |||| |||||| ||| || ||||| || || || ||| | | || Sbjct 2181 GTTCGATGGCTCTGCCAACATTACCATCCCGACACTGGTGTCTCGTGGGCGCATTAGCGC 2122 Query 32450 CCTGGAGGCGAATGCACAGGGAACAT---CCGGGATTCAGCTGTATGAGGCATACAACAA 32506 ||||||| ||||| ||||| || | || |||||| |||| || || || ||||| Sbjct 2121 ACTGGAGGGGAATGTTCAGGGCGCAATGCCAGGCATTCAGATGTACGAAGCCTATAACAA 2062 Query 32507 TGGCTACCCTTCCCCCTATGGCAATGTGCTTCACCTTAAAGGTGCCACCGCTGCTGGCGA 32566 |||||| || | ||| ||||| | || || | ||||| || || ||| || Sbjct 2061 TGGCTATCCGACAAGCTACGGCAACATCCTGCATATGAAAGGCGCACAAGCAAGTGGTGA 2002 Query 32567 AGGTGAGTTATTCATTGGCTGGAGTGGCACGAGCGGTGCCCATGCGCCCGTACATATCCG 32626 || ||| | | ||||||||||||| | || || |||||||| || |||| || Sbjct 2001 GGGCGAGCTGCTTGTTGGCTGGAGTGGGTCAGATGGCGCTCATGCGCCGGTTTATATTCG 1942 Query 32627 TTCGCGGCGGGATACTGATTCTGCCAACTGGTCTGAATGGGCGCAGGTCTATAC 32680 ||| || || ||||| | || |||||||||| |||||||||||||| || Sbjct 1941 TTCTCGCCGTGATACAGTGGGAGCGAACTGGTCTGGTTGGGCGCAGGTCTACAC 1888 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 33108 CTTGCAGGTTGCGTTATTGAGGTTATGGGTAATAAAGGTGCCATGACCATCCGTGTAACA 33167 ||||| ||| ||||| |||||| | |||| |||| || ||||||||||| || || Sbjct 1676 CTTGCTGGTGCGGTTATCGAGGTTTTAGGTACCGAAGGCGCAATGACCATCCGAGTTACT 1617 Query 33168 ACACCAAGCACTTCCAGCGGTGGCGGAATCACTAACGCTCAATTCACTTATATTAATCAT 33227 || || | || | | |||||| || || | ||||| ||||| ||||||||||| Sbjct 1616 ACGCCTACAACGACTACCGGTGGTGGGATTGCCTGTGCTCAGTTCACCTATATTAATCAC 1557 Query 33228 GGTGATGCTTACGCTCCTGGCTGGCGACGAGACTACAACAC 33268 ||| || || || |||| |||||| |||| |||||||| Sbjct 1556 GGTAGCGCGTATGCCCCTGCCTGGCGCAGAGATTACAACAC 1516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303230114745696