Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq82 136 1e-27 >seq82 Length=657493 Score = 136 bits (150), Expect = 1e-27 Identities = 240/346 (69%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 32902 ACCAAGCATTTGCATGGT---TCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATT 32958 ||| ||||||||||| || |||| || |||| || ||| |||||| | || || Sbjct 205862 ACCTAGCATTTGCATTGTACCTCCAATATTTACAACAAT---TTCTGTAGTGTAGCG-TT 205917 Query 32959 CT-GTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAG 33017 || ||| |||| |||||||||||||| || ||||| ||||||| ||| || | || Sbjct 205918 CTAAACCATTTTGATCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAG 205977 Query 33018 AGCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGT 33077 | |||||||| ||||| |||| |||||||| || | ||| || | || | | | Sbjct 205978 AACCTTTTCGAAGATATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTAT 206037 Query 33078 GCCACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAG 33137 |||| || || | || || | || ||||||||||||||| ||| | |||||| || | Sbjct 206038 GCCATTCAGTTTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTG 206097 Query 33138 CTATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTGTC 33197 ||| ||||| || | | ||| | || || || | |||||| || ||||| | Sbjct 206098 CTAATGTCATATTCACTACCGCATTACCATTAGGCATATAACGAACTTCAGGATCTTGAC 206157 Query 33198 CAACCCGACAAAGGATAATCACCTTATTTACGCCTCTGCTTGCCAT 33243 | | | | || | ||| || |||||||| ||||| || ||||| Sbjct 206158 CTAAATGCCCAATCAGAATAACTTTATTTACACCTCTACTAGCCAT 206203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149955949679744