Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11 123 3e-23 seq12 104 3e-17 seq8 87.8 2e-12 >seq11 Length=45114658 Score = 123 bits (136), Expect = 3e-23 Identities = 399/610 (65%), Gaps = 12/610 (2%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || |||||||||||||||| || ||||||| | || | |||||||| || || | Sbjct 34047548 CAGGCGAAATCGCAGTGCAAGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAC 34047489 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| |||||||| || || || ||| || || |||||| Sbjct 34047488 CCAGGCATGAGCCCTCGCTTCTTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAG 34047429 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC-TCCATAACCGGCGCTGTCATGTAT 33482 || ||||| || ||| ||||| | | ||||| | | | | | | | | | || Sbjct 34047428 ATCCCTTCGACGCAAGCGAAGGCGACGATCCTCTCGGCGAAAGTCTGAGAT-CCGTCGAT 34047370 Query 33483 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33542 |||| | ||||| | ||||||||| || ||||| || || || || || || Sbjct 34047369 CCACGTCATGGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAA 34047310 Query 33543 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33602 || | || | || || | || || | || || |||| || || || ||||| || Sbjct 34047309 AAGGTGGTCCCTCTCCTTGTTGTCCTTGATGTACGTGTCGAGCAGGAGGCTGTACATCTC 34047250 Query 33603 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33662 || || || || ||||| || ||||| || |||||||| | ||||||| | || Sbjct 34047249 TGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACTTG 34047190 Query 33663 TACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33721 || || | ||| || || || | ||| || || |||||||| ||| || | Sbjct 34047189 CACGTC-GGACATGAACCGCGAGGCGAGATTCTCCAAAACGATTCCGTCTGAGGCGGCGA 34047131 Query 33722 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATC- 33779 | || || | || ||||| || || | || || | ||| || || | ||| || Sbjct 34047130 AGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGATTCTCCCAGTCG 34047072 Query 33780 --ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 |||| |||| || | || |||||||| | ||||| || || || || ||||| Sbjct 34047071 CGATTG---TCTTGGGAGAGGTCGACTTCTTCGGCGGTCCAGAAAGAGGCTTCGGCCTTC 34047015 Query 33838 TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || ||||| | |||||| | |||||||| ||||| || ||||| | ||| || Sbjct 34047014 TTGTACATCTCCCAGATCTGCGGGTATTGGATCGGGAACATGCAGAATCTGTCTGGGGTT 34046955 Query 33898 GGTGCAAGGA 33907 || | |||| Sbjct 34046954 GGGGTGAGGA 34046945 >seq12 Length=46391361 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| || || | ||| | |||||| | ||| |||| | || |||||||| |||||| Sbjct 30921085 TCCTCCTTGGTCAACGTAGCGAGCGGTATCATTGAAAACACGCAGCATTGGAAGAATACC 30921026 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || || || |||||| | ||||| || || || ||| Sbjct 30921025 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 30920966 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || ||||| || |||| || | ||||| ||| || || ||||| || Sbjct 30920965 AACACCGATACCCCCAGCTGATTTACTTATAACAGCGCACTCTTTCAAGGTATCATATAT 30920906 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 ||||| ||||||||||| ||||| Sbjct 30920905 TCCCTCGATGCTATCATCCTTCATG 30920881 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| | ||| || | || |||||||| || ||||||||| | ||| | || || Sbjct 30920759 AGTTCCTGAATTGAAGAGAGTCGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 30920700 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 30920699 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 30920640 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||||||||||||||| ||||| | || | | ||| || | ||| ||| | || | Sbjct 30920639 CATGTGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 30920580 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||| || ||||| |||| |||| ||| || || || ||||| || Sbjct 30920579 AGTTTTGAACCCAAAGTAGTCGTATTCAAAATCACGATCATAAATGAT 30920532 >seq8 Length=24646021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| | ||| || | || ||||| || || ||||||||| | | ||| | || || Sbjct 14311192 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATG 14311133 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63730 ||| || | || || || || ||||| || ||||| || || | || | ||| | Sbjct 14311132 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 14311073 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 ||| ||||||||||| ||||| | || | | ||| || | ||| ||| | || | Sbjct 14311072 CATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 14311013 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| || ||||| |||| ||| ||| || || || ||||| || Sbjct 14311012 TGTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 14310965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622936485308160