Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_007049.1 Length=43883 Score E Sequences producing significant alignments: (Bits) Value seq137 82.4 2e-11 >seq137 Length=409738 Score = 82.4 bits (90), Expect = 2e-11 Identities = 169/247 (68%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 37286 TCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGCATTT 37341 |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || ||| Sbjct 26636 TCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAATCTTT 26581 Query 37342 TAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATTTTAG 37401 ||||||||| ||||| ||||| | | || || ||||| |||| || | | ||||| Sbjct 26580 TAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTTTTAC 26521 Query 37402 GTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACACGGA 37458 | || ||||| || || |||||||| ||| |||| ||||||||| || || | Sbjct 26520 TATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACTCGCA 26461 Query 37459 TAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACCTCAA 37518 | | ||| | |||||||||| | ||||| | |||||| || | ||| | || Sbjct 26460 CATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACTTAAA 26401 Query 37519 TCAAAAA 37525 ||||| Sbjct 26400 CGAAAAA 26394 Score = 82.4 bits (90), Expect = 2e-11 Identities = 169/247 (68%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 37286 TCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGCATTT 37341 |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || ||| Sbjct 69434 TCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAATCTTT 69379 Query 37342 TAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATTTTAG 37401 ||||||||| ||||| ||||| | | || || ||||| |||| || | | ||||| Sbjct 69378 TAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTTTTAC 69319 Query 37402 GTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACACGGA 37458 | || ||||| || || |||||||| ||| |||| ||||||||| || || | Sbjct 69318 TATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACTCGCA 69259 Query 37459 TAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACCTCAA 37518 | | ||| | |||||||||| | ||||| | |||||| || | ||| | || Sbjct 69258 CATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACTTAAA 69199 Query 37519 TCAAAAA 37525 ||||| Sbjct 69198 CGAAAAA 69192 Score = 82.4 bits (90), Expect = 2e-11 Identities = 169/247 (68%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 37286 TCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGCATTT 37341 |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || ||| Sbjct 112155 TCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAATCTTT 112100 Query 37342 TAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATTTTAG 37401 ||||||||| ||||| ||||| | | || || ||||| |||| || | | ||||| Sbjct 112099 TAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTTTTAC 112040 Query 37402 GTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACACGGA 37458 | || ||||| || || |||||||| ||| |||| ||||||||| || || | Sbjct 112039 TATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACTCGCA 111980 Query 37459 TAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACCTCAA 37518 | | ||| | |||||||||| | ||||| | |||||| || | ||| | || Sbjct 111979 CATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACTTAAA 111920 Query 37519 TCAAAAA 37525 ||||| Sbjct 111919 CGAAAAA 111913 Score = 82.4 bits (90), Expect = 2e-11 Identities = 169/247 (68%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 37286 TCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGCATTT 37341 |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || ||| Sbjct 155244 TCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAATCTTT 155189 Query 37342 TAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATTTTAG 37401 ||||||||| ||||| ||||| | | || || ||||| |||| || | | ||||| Sbjct 155188 TAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTTTTAC 155129 Query 37402 GTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACACGGA 37458 | || ||||| || || |||||||| ||| |||| ||||||||| || || | Sbjct 155128 TATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACTCGCA 155069 Query 37459 TAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACCTCAA 37518 | | ||| | |||||||||| | ||||| | |||||| || | ||| | || Sbjct 155068 CATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACTTAAA 155009 Query 37519 TCAAAAA 37525 ||||| Sbjct 155008 CGAAAAA 155002 Score = 82.4 bits (90), Expect = 2e-11 Identities = 169/247 (68%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 37286 TCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGCATTT 37341 |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || ||| Sbjct 326128 TCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAATCTTT 326073 Query 37342 TAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATTTTAG 37401 ||||||||| ||||| ||||| | | || || ||||| |||| || | | ||||| Sbjct 326072 TAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTTTTAC 326013 Query 37402 GTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACACGGA 37458 | || ||||| || || |||||||| ||| |||| ||||||||| || || | Sbjct 326012 TATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACTCGCA 325953 Query 37459 TAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACCTCAA 37518 | | ||| | |||||||||| | ||||| | |||||| || | ||| | || Sbjct 325952 CATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACTTAAA 325893 Query 37519 TCAAAAA 37525 ||||| Sbjct 325892 CGAAAAA 325886 Score = 82.4 bits (90), Expect = 2e-11 Identities = 169/247 (68%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 37286 TCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGCATTT 37341 |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || ||| Sbjct 369515 TCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAATCTTT 369460 Query 37342 TAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATTTTAG 37401 ||||||||| ||||| ||||| | | || || ||||| |||| || | | ||||| Sbjct 369459 TAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTTTTAC 369400 Query 37402 GTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACACGGA 37458 | || ||||| || || |||||||| ||| |||| ||||||||| || || | Sbjct 369399 TATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACTCGCA 369340 Query 37459 TAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACCTCAA 37518 | | ||| | |||||||||| | ||||| | |||||| || | ||| | || Sbjct 369339 CATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACTTAAA 369280 Query 37519 TCAAAAA 37525 ||||| Sbjct 369279 CGAAAAA 369273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140301707432640