Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8 113 1e-19 seq1 113 1e-19 seq114 98.7 3e-15 seq2 98.7 3e-15 seq3 96.9 9e-15 seq16 93.3 1e-13 seq12 86.0 2e-11 >seq8 Length=24646021 Score = 113 bits (124), Expect = 1e-19 Identities = 163/224 (73%), Gaps = 11/224 (5%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||||||| ||| ||||| || | ||| ||| | ||| | ||||| |||| Sbjct 14311316 ATGAAGGACGATAGCATTGAGGGAATTTATGATACATTGAAGGAGTGTGCAGTTAT---- 14311371 Query 363682 AAG--AAT--GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTT 363736 ||| ||| || || || |||||||| || | ||||| | ||||| |||| | |||| Sbjct 14311372 AAGTAAATCAGCTGGGGGTATTGGTGTTTCAGTTCACAACATCCGTGCGACAGGA-AGTT 14311430 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||||||| |||||| ||| || ||||| | |||| ||||| ||||| || | Sbjct 14311431 ACATTCGTGGCACAAATGGAACATCTAATGGTATTCTTCCAATGCTGCGTGTTTTCAATG 14311490 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||||||| | ||||| ||||| || ||||||||| | |||||| Sbjct 14311491 ATACTGCTCGCTACGTTGACCAAGGAGGAGGAAAGAG-AAAGGG 14311533 >seq1 Length=46747018 Score = 113 bits (124), Expect = 1e-19 Identities = 117/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| ||||| || | | | ||| |||||||| || | | || |||||| Sbjct 3084182 ATGGCACTTCCTCCATGCCA-CATGTTTGCTCAGTTTTACGTTGCCAATGGAGAGCTTTC 3084240 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||| |||||||||||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct 3084241 ATGTCAAATGTATCAGCGCTCAGCTGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 3084300 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| | || ||||| || | |||||||| Sbjct 3084301 ATACTCCCTTCTTACATGTATCCTCGCTCAT 3084331 >seq114 Length=481428 Score = 98.7 bits (108), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| || || || | | | ||| |||||||| || |||| ||| || Sbjct 455310 ATGGCACTTCCTCCTTGCCA-CATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTC 455368 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 455369 GTGTCAAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 455428 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||| ||||| ||| | | |||||| Sbjct 455429 ATACTCACTTCTTACATGCATCCTAGCTCAT 455459 >seq2 Length=31488241 Score = 98.7 bits (108), Expect = 3e-15 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||||||||| || || || | | | ||| |||||||| || |||| ||| || Sbjct 13040032 ATGGCACTTCCTCCTTGCCA-CATGTTTGCACAGTTTTACGTTGCAAACGGAGAGCTCTC 13040090 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || |||||||||||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct 13040091 GTGTCAAATGTATCAGCGCTCAGCAGATATGGGTCTTGGTGTACCGTTTAACATTGCCTC 13040150 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||| |||| ||||| ||| | | |||||| Sbjct 13040151 ATACTCACTTCTTACATGCATCCTAGCTCAT 13040181 >seq3 Length=51870232 Score = 96.9 bits (106), Expect = 9e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| || || || || || | | | ||| ||||| ||||| || ||| |||||| Sbjct 35473268 ATGGCGCTGCCTCCGTGCCA-CATGTTTGCACAGTTCTATGTGGCGGAAGGGGAGCTTTC 35473326 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 |||| | ||||||||||| || || ||||| || |||| ||| |||||||| ||||| Sbjct 35473327 ATGCAAGATGTATCAGCGTTCAGCGGATATGGGCCTTGATGTGCCGTTTAACATTGCTTC 35473386 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||| | || ||||||||| | | ||||| | |||| || ||||| || || Sbjct 35473387 CTACTCTCTTCTTACTTGCATGCTAGCTCACGTGTGTGATCTTGTTCCCGGTGATTTTAT 35473446 Query 111851 TCACGTTATCGGAGATGCGCATGTTTA 111877 || || || || ||||| ||||| || Sbjct 35473447 CCATGTAATTGGGGATGCTCATGTGTA 35473473 >seq16 Length=39632211 Score = 93.3 bits (102), Expect = 1e-13 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 111672 ATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTACACGACGGGATGCTTTC 111730 ||||| ||||| || || || | | | ||| ||||| ||||| || ||| ||| || Sbjct 38025195 ATGGCGCTTCCTCCGTGCCA-CATGTTTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTC 38025137 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 ||||| ||||||||||| || || ||||| || |||||||| |||||||| || || Sbjct 38025136 GTGCCAGATGTATCAGCGTTCGGCGGATATGGGCCTTGGTGTGCCGTTTAACATCGCTTC 38025077 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCA 111820 ||| | || ||||||||| | ||||||| Sbjct 38025076 CTACTCTCTTCTTACTTGCATGCTCGCTCA 38025047 >seq12 Length=46391361 Score = 86.0 bits (94), Expect = 2e-11 Identities = 157/224 (70%), Gaps = 11/224 (5%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||||||||| || | ||| || | || | || ||| |||| Sbjct 30920882 ATGAAGGATGATAGCATCGAGGGAATATATGATACCTTGAAAGAGTGCGCTGTTAT---- 30920937 Query 363682 AAG--AAT--GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA-CAGAACAGTT 363736 ||| ||| || || || || ||||| || | ||||| | |||||| | | | |||| Sbjct 30920938 AAGTAAATCAGCTGGGGGTATCGGTGTTTCAGTTCACAACATCCGTGCAACTGGA-AGTT 30920996 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 ||||||| |||||| ||| || ||||| | |||| ||||| ||||| || | Sbjct 30920997 ACATTCGTGGCACAAATGGAACATCTAATGGTATTCTTCCAATGCTGCGTGTTTTCAATG 30921056 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| || | ||||| ||||| || ||||| ||| | |||||| Sbjct 30921057 ATACCGCTCGCTACGTTGACCAAGGAGGAGGCAAGAG-AAAGGG 30921099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303330621876032