Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq362 93.3 4e-14 seq14 82.4 6e-11 >seq362 Length=95773 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||||||||| || || |||||||| |||| ||| | Sbjct 37697 ATGCAAATTTTCGTGAAAACGCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGCTCT 37756 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| || ||||| || || || || || || |||||| |||| ||||| Sbjct 37757 GACACCATT-GACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGATCA 37815 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| || ||||| |||| |||| ||| |||| ||||| || Sbjct 37816 GCAGAGGCTCATCTTTGCCGGTAAACAGCTAGAGGATGGACGTACCTTGGCGGATTACAA 37875 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || || ||||| ||| | ||| |||| | || ||| | || || Sbjct 37876 CATCCAGAAGGAGTCAACTCTCCATCTGGTTCTCAGGTTGAGGGGTGG 37923 >seq14 Length=60807478 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGG-AGTCCAG 115344 ||||| || |||||||| ||| | || |||||||| ||||| | || || || | Sbjct 28597319 ATGCAGATCTTTGTCAAGACGTTGACTGGAAAAACTATTACATTGGAGGTGGGAGAGCTC 28597260 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||| ||| ||| |||| || ||| ||| || || || || || | || || | Sbjct 28597259 CGATACTATTG-ACAACGTCAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCGGACC 28597201 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || | || | || ||||| || | ||||| | || ||| |||| || || | Sbjct 28597200 AGCAGAGGTTGATCTTCGCCGGCAAGCAGCTTGAAGACGGCAGAACATTGGCGGACTACA 28597141 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||| |||||||| | || |||||||| | |||| ||||| Sbjct 28597140 ACATTCAAAAGGAGTCTACACTTCACTTGGTGTTGCGTCTGCGTGGAGG 28597092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425336866981120